block6557_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block6557_cand 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block6557_cand 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0 |
block6557 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.50/0.50 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | 2 | 3arm | 1 | nd | 0.25 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------GAACAAC---------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------------------------AGAACAACCACCTCTCAGGA---------- | 20 | 1 | |
| rat | ggggaatcctttagcctgtgctgagaagtggctgttttggattgggactggggattggccAGAACAACCACCTCTCAGGAatggccccta | ||
| ****************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000004172 ENSRNOG00000002997 Slc9a3r2 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043592 ENSRNOG00000002997 Slc9a3r2 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000004066 ENSRNOG00000002997 Slc9a3r2 | ||
| rat | ((((.........(((....((((((.((((.((((((((..................)))))))).)))).))))))....))))))). | 0.630 -32.37 |
| rat | chromosome:10:13894917:13895006:-1 | Same_strand|Intronic_coding|ENSRNOT00000004172|ENSRNOG00000002997 ## ENSRNOG00000002997|protein_coding|Slc9a3r2|Na(+)/H(+) exchange regulatory cofactor NHE-RF2 (NHERF-2) (Tyrosine kinase activator protein 1) (TKA-1) (SRY-interacting protein 1) (SIP- 1) (Solute carrier family 9 isoform A3 regulatory factor 2) (NHE3 kinase A regulatory protein E3KARP) (Sodium-hydroge [Source:UniProtKB/Swiss-Prot;Acc:Q920G2] |
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