Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block6619_cand

block6619_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block6619_cand 3arm	0	1	0	0	0	0	0	0	0	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block6619_cand 3arm	0	0.000	0	0	0	0	0	0	0	0.000

block6619_cand relative cloning frequencies

block6619 [novel_mirtron_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.45/0.48	22/23/1.00	0.0	0.5	2	0	2	0	5	5	3arm	1	0	0.23	2	2	2	na	na

Families
Member of family novel77 (seed CUGACCC): block6619_cand, block2305240_cand

block6619 hairpin

		reads	miRBase family seed
seed	---------------------------------------------------------CUGACCC--------------------	2	novel
		len	cloning frequencies
			T1S2	T5S2
	--------------------------------------------------------TCTGACCCTGATTTTATCCCAG------	22	-	1
	--------------------------------------------------------TCTGACCCTGATTTTATCCCAGG-----	23	1	-
rat	--------TACGGGATGGGATGAGGCAGGGGAAAGGACAGACAGCACTTGGGCTTGTCTGACCCTGATTTTATCCCAGGACGTG
human	GTGGGCCCCAAGGGCAGGGAAGAGTCGGGGTGGAGTGGAGGC----------CCCATCTGACCCTAGTCTAACCCCAG------
	* * * * * ** * * ********* * * * *****
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>	ENSRNOT00000018405 ENSRNOG00000013429 Tbl3
rat	((((...(((((((((((((((....(((((...(((......))))))))..))))).))))))))))...))))	1.000 -34.30
human	.((((......((((((((.(((...(((((.........)) ))).)))..)))).))))...)))).	0.414 -24.40

rat	chromosome:10:13954910:13954985:-1	Same_strand\|Boundary_coding\|ENSRNOT00000018405\|ENSRNOG00000013429 ## ENSRNOG00000013429\|protein_coding\|Tbl3\|transducin (beta)-like 3 [Source:RefSeq_peptide;Acc:NP_001008278]
human	chromosome:16:1967654:1967769:1	Same_strand\|Boundary_coding\|ENST00000332704\|ENSG00000183751\|protein_coding\|WD repeat-containing protein SAZD (Transducin beta-like 3 protein) [Source:UniProtKB/Swiss-Prot;Acc:Q12788] ## Same_strand\|Boundary_non-coding\|ENST00000355082\|ENSG00000183751\|protein_coding\|WD repeat-containing protein SAZD (Transducin beta-like 3 protein) [Source:UniProtKB/Swiss-Prot;Acc:Q12788]

©2008 InteRNA Genomics B.V.