Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block702541_cand

block702541_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block702541_cand 5arm	0	0	0	0	0	0	0	0	0	0.100
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block702541_cand 5arm	0	0	0	0	0	0	0	0	0	0.000

block702541_cand relative cloning frequencies

block702541 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	33	2	5arm	10	nd	0.29	2	1	1	na	na

Families
Member of family novel20 (seed CCAUAUC): block130621_cand, block533865_cand, block702541_cand, block1234980_cand

block702541 hairpin

		reads	miRBase family seed
seed	----------------------------------CCAUAUC---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	---------------------------------ACCATATCAATGCAGCCATTT--------------------------------------------------------------	21	1
rat	ttcttgtcctggagttcctgggacagggctgcaACCATATCAATGCAGCCATTTcagtaccatggatgtctgacttgatatatgttttcccgtcctggggtacccaggacaaggac
	********************************************************************************************************************
rat	((((((((((((.(((((..((((.(((..(((...(((((((..(((.((.((((......)))))).)))..))))))).)))...)))))))..))).)))))))))))))).	0.980 -54.10

rat

chromosome:18:39938731:39938846:-1

intergenic

©2008 InteRNA Genomics B.V.