miR-Intess: block70485

block70485_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.77/0.77	22/22/1.00	0.0	0.0	1	0	1	0	22	7	5arm	1	nd	0.09	1	1	1	na	na

		reads	miRBase family seed
seed	-----------------------CCGCCGC-----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S2
	----------------------CCCGCCGCCTCCGCAGCTTGAG---------------------------------------------------------------------------	22	1
rat	CATCCATCCAGGAATGTATCTGCCCGCCGCCTCCGCAGCTTGAGCAGTGATTCGGTGTTGCTCTCG--------CCCTCGGCTGCTGGAGGCGGCGCCCTGGGCCTTGCTGGATGTTTG
human	----------------------CCCGCCGCCTCCGCAGCCCGCGCGCCGG---AGCATGAGTCCCGGCCGGAGCCCCACGGCCGC---GGGCGGCGCC---------------------
	***************** * ** * * * * *********
rat	((..(((((((.((.((.......((((((((((((((((((((.((..((.....))..)))))) .....)))))).))))))))))......)).)).)))))))..))	0.960 -55.62
human	..((((((..((((.(((.((..((((( .((....)).)))))....)).....))).)) ))))))))..	0.225 -35.40

rat	chromosome:10:38937288:38937398:1	intergenic
human	chromosome:8:27547422:27547572:1	Same_strand\|Boundary_non-coding\|ENST00000301904\|ENSG00000168077\|protein_coding\|Scavenger receptor class A member 3 (Cellular stress response gene protein) [Source:UniProtKB/Swiss-Prot;Acc:Q6AZY7] ## Same_strand\|Exonic_non-coding\|ENST00000337221\|ENSG00000168077\|protein_coding\|Scavenger receptor class A member 3 (Cellular stress response gene protein) [Source:UniProtKB/Swiss-Prot;Acc:Q6AZY7] ## {SimpF: oe = 0.85 0 CpG, -1 Eponine, 1 Eponine, -1 Eponine,rank = 1 -1 FirstEF, -1 Eponine, -1 Eponine}