miR-Intess: block71535

block71535_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block71535_cand 3arm	1	0	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block71535_cand 3arm	0.000	0	0	0	0	0	0	0	0	0

block71535 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.86/0.86	21/21/1.00	0.0	0.0	1	0	1	0	17	14	3arm	1	nd	0.29	3	1	1	na	na

Families
Member of family novel191 (seed CCACCCC): block71535_cand, block2358678_cand

		reads	miRBase family seed
seed	-------------------------------------------------------------------------CCACCCC------------------------------	1	novel
		len	cloning frequencies
			T1S1
	------------------------------------------------------------------------GCCACCCCCACCCCCTCCCCC-----------------	21	1
rat	gagtcaccagggagaagagactcttggtgggtggggcttggagaaagtttcaaaagctgactccttctcagaGCCACCCCCACCCCCTCCCCCtccgcctgtgcggctct
	**************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000017486 ENSRNOG00000012840 Sparc
rat	(((((..(((((((..(((......((((((.(((((((.(((((((((.........))))..))))).))))).))))))))..)))...))))..)))...))))).	0.430 -44.00

rat

chromosome:10:40829947:40830056:1

Opposite_strand|Intronic_non-coding|ENSRNOT00000017486|ENSRNOG00000012840 ## ENSRNOG00000012840|protein_coding|Sparc|SPARC precursor (Secreted protein acidic and rich in cysteine) (Osteonectin) (ON) (Basement-membrane protein 40) (BM-40). [Source:UniProtKB/Swiss-Prot;Acc:P16975] ## {Repeats: dust 40830023 40830039 0 class=dust}

miR-Intess™

block71535_cand

block71535 [novel_randfoldOK]