miR-Intess: block72297

block72297_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.010	no	no	0.59/0.65	20/22/1.00	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	12 17	16 9	5arm 5arm	1 1	nd nd	0.40 0.23	5 2	2	2	na	na

		reads	miRBase family seed
seed	-------------CCCCAUG-------------------------------------------------------------------------------	1	novel
seed	------------------UGCGUGU--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1	T3S2
	------------ACCCCATGCGTGTGCCCTGT-------------------------------------------------------------------	20	-	1
	-----------------ATGCGTGTGCCCTGTTTCCCTC------------------------------------------------------------	22	1	-
rat	CATTTGCAAAACACCCCATGCGTGTGCCCTGTTTCCCTCCCCGCCTCACCCGTGTGCAGGGGATTGAATGGAGGGCCATGCACATGTTAAGCTAGTGG-
mouse	------------ACCCCATGTGTGTGCCCTGTTCCCTTCCC--CCTTGCTCATGTGCAGGGGGTTGAATGGAGGGCCTTGTGCATGTTAAGCTAGTGGT
	****** ******** ** * * * ******** ********** ****************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	ENSRNOT00000003447 ENSRNOG00000002488 Galnt10
rat	((((.((..((((.....((((((.(((((..(((..(((((((..((....)).)).)))))..)))...)))))))))))..))))..)).)))).	1.000 -37.40
mouse	....((((..((.((((...(((.((((( ((((((......))))))))..))).)))))))..))..)))).............	0.871 -33.40

rat	chromosome:10:43270957:43271054:1	Same_strand\|Intronic_coding\|ENSRNOT00000003447\|ENSRNOG00000002488 ## ENSRNOG00000002488\|protein_coding\|Galnt10\|Polypeptide N-acetylgalactosaminyltransferase 10 (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 10) (UDP- GalNAc:polypeptide N-acetylgalactosaminyltransferase 10) (Polypeptide GalNAc transferase 10) (GalNAc-T10) (pp-GaNTase 10). [Source:UniProtKB/Swiss-Prot;Acc:Q925R7]
mouse	chromosome:11:57492895:57493032:1	Same_strand\|Intronic_coding\|ENSMUST00000108846\|ENSMUSG00000020520\|protein_coding\|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 Gene [Source:MGI (curated);Acc:Galnt10-001]