block7261_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block7261_cand 3arm | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block7261_cand 3arm | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 |
block7261 [novel_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.65/0.65 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 10 | 3arm | 1 | 2 | 0.20 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------UGGCCUG-------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------------------------------------------CTGGCCTGCTCACTCCTCCT-------- | 20 | 1 | |
| rat | ggggacatggaggggtcagagggtcaggacctagctgctcctgcagggattcCTGGCCTGCTCACTCCTCCTagggcctg | ||
| ******************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> | ENSRNOT00000026139 ENSRNOG00000019174 NP_001099243.1 | ||
| rat | .(((....((((((((.((.(((((((((((...((((....))))))..))))))))).)).)))))))).....))). | 1.000 -41.20 |
| rat | chromosome:10:14990336:14990415:-1 | Same_strand|Intronic_coding|ENSRNOT00000026139|ENSRNOG00000019174 ## ENSRNOG00000019174|protein_coding|NP_001099243.1|CTF18, chromosome transmission fidelity factor 18 homolog [Source:RefSeq_peptide;Acc:NP_001099243] |
©2008 InteRNA Genomics B.V.