logoSmall RNA from different tissues of two rat strains.


miR expression

block775972_cand

block775972_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block775972_cand 5arm0001000000
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block775972_cand 5arm0000.000000000
block775972_cand relative cloning frequencies

block775972 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.001nono0.43/0.4323/23/1.000.0
0.0
1
0
1
0
29
7
5arm
1
nd
0.04
1
11nana
block775972 hairpin
  readsmiRBase family seed
seed     ------------------------------UGGGAUU------------------------------------------------------------------------------     1novel
  lencloning frequencies
   T2S2
      -----------------------------ATGGGATTGTGTGTGGTGAACAT---------------------------------------------------------------     231
rat     tgtgtgtgtgtgtagttttatatatttgtATGGGATTGTGTGTGGTGAACATgcttgttcatgcaggcacgcatgttcacatacatgcagggttcatgctcacatgcctgcacag      
      *******************************************************************************************************************      
 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000004093 ENSRNOG00000003496 RGD1308221_predicted
 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000004749 ENSRNOG00000003496 RGD1308221_predicted
rat     ((((((((((((...............(((((((.(((((((((((((((((((.((((......)))).)))))))))).)))))))))..))))))).)))))))..))))).     0.570 -45.29

ratchromosome:19:26650574:26650688:-1Same_strand|Intronic_coding|ENSRNOT00000004749|ENSRNOG00000003496 ## ENSRNOG00000003496|protein_coding|RGD1308221_predicted|


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