block780942_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block780942_cand 5arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block780942_cand 5arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 |
block780942 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.55/0.55 | 22/22/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 5 | 4 | 5arm | 1 | nd | 0.23 | 3 | 2 | 1 | na | na |
| Located in cluster 40: block780941_cand, block780942_cand |
| reads | miRBase family seed | ||
| seed | -----------------------------CCAGGCU---------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| ----------------------------TCCAGGCTCAGGACCTATGTCT-------------------------------------------------------------------- | 22 | 2 | |
| rat | ---------------GCT---C-----TTCCAGGCTCAGGACCTATGTCTAATCCCAGATTAGGAGGGCTTC-------CTGGTCCTGGTCCTATGGCC------------------- | ||
| human | ---GTGCCCAGGGCTGCTCCACCCCAGCTCCAGGCTCAGGACCCTGTGGTGAGTCATCTCCGCGAGGCCTCCTTCCCGGAGGGTC--GGGCGGCGGGCC------------------- | ||
| mouse | GGAGGGGCAGAGGTGGTT---CACGGATTCCAGGCTCAGGACCTTGGTGTGGCCCTGCCCCATGGAGGCCAC-------AGGGCCCTGGGCCTGGACCCCTGCCATTGGAACTCTTCT | ||
| * * * *************** * * * * * * ** * ** * ** | |||
| rat | ((( . ..(((((..((((((((...(((((((...))))))).)))..)) )))..)))))......))). | 0.860 -26.30 | |
| human | ..((((...(((((((.((((....(((.((...(((.((.(((((.((....)).))))).)))))....)).))))))). ))))))))))). | 0.983 -44.30 | |
| mouse | (((((((....((((((. ...((..((((((((((((.(((...(((((((...((....)).)))))) )))).))))))))))))..)).))))))....))))))) | 0.999 -58.50 |
| rat | chromosome:19:36733935:36734003:-1 | intergenic |
| human | chromosome:11:488714:488807:-1 | Same_strand|Boundary_coding|ENST00000354420|ENSG00000023191|protein_coding|Ribonuclease inhibitor (Ribonuclease/angiogenin inhibitor 1)(RAI)(Placental ribonuclease inhibitor)(RNase inhibitor)(RI) [Source:UniProtKB/Swiss-Prot;Acc:P13489] |
| mouse | chromosome:4:138281259:138281366:1 | Opposite_strand|Boundary_non-coding|ENSMUST00000105811|ENSMUSG00000043621|protein_coding|UBX domain protein 10 Gene [Source:MGI (curated);Acc:Ubxd3-001] ## Opposite_strand|Intronic_non-coding|ENSMUST00000068172|ENSMUSG00000043621|protein_coding|UBX domain protein 10 Gene [Source:MGI (curated);Acc:Ubxd3-001] ## Same_strand|Boundary_non-coding|ENSMUST00000030530|ENSMUSG00000028750|protein_coding|phospholipase A2, group IIC Gene [Source:MGI (curated);Acc:Pla2g2c-001] ## Same_strand|Intronic_non-coding|ENSMUST00000105808|ENSMUSG00000028750|protein_coding|phospholipase A2, group IIC Gene [Source:MGI (curated);Acc:Pla2g2c-001] |
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