miR-Intess: block80362

block80362_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block80362_cand 3arm	0	0	0	0	0	0	0	0	0.250	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block80362_cand 3arm	0	0	0	0	0	0	0	0	0.000	0

block80362 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	6	35	3arm	4	nd	0.30	2	1	1	na	na

Families
Member of family novel102 (seed GGAAGAA): block80362_cand, block3194316_cand

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------GGAAGAA------------------	1	novel
		len	cloning frequencies
			T5S1
	------------------------------------------------------------------------------------AGGAAGAAGAAGAAGATGAG------	20	1
rat	tccaacttaactcttccctacctatccacccactccaccccgggtcccacctccacacaagaagaatgggggggagagggagggAGGAAGAAGAAGAAGATGAGgaggag
	**************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000026351 ENSRNOG00000019458 Carkl
rat	(((..((((.((((((.((.(((.(((.(((.((((.(((((((.....)))...............)))).)))).))).)))))).))..)))).)).))))..))).	0.830 -41.06

rat

chromosome:10:60089097:60089206:1

Same_strand|Intronic_coding|ENSRNOT00000026351|ENSRNOG00000019458 ## ENSRNOG00000019458|protein_coding|Carkl|carbohydrate kinase-like [Source:RefSeq_peptide;Acc:NP_001028854] ## {Repeats: trf 31 51 0 class=trf,trf 60 80 0 class=trf,GA-rich 15 35 1 class=Low_complexity,dust 60089244 60089264 0 class=dust,trf 87 107 0 class=trf,GA-rich 1 46 1 class=Low_complexity}

miR-Intess™

block80362_cand

block80362 [novel_randfoldOK]