logoSmall RNA from different tissues of two rat strains.


miR expression

block822182_cand

block822182_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block822182_cand 3arm0000001200
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block822182_cand 3arm0000000.0000.00000
block822182_cand relative cloning frequencies

block822182 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.001nono0.45/0.4522/22/1.000.0
0.0
3
0
2
0
26
6
3arm
1
nd
0.18
2
32nana
block822182 hairpin
  readsmiRBase family seed
seed     -----------------------------------------------------------------------ACACAUC----------------------------------------     3novel
  lencloning frequencies
   T4S1T4S2
      ----------------------------------------------------------------------CACACATCTGCTCACACAAACA--------------------------     2212
rat     tcctggtatttttatggtggtttggttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatgcaCACACATCTGCTCACACAAACAtaaaacaccacacacatgagtgtgga      
      **********************************************************************************************************************      
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000014492 ENSRNOG00000010744 Nrp1
rat     (((...(((((...(((((((...(((((((((.((((((.((..(((((((((((((......)))))))))))))..)).)))))).)))))))))))))).))...))))).)))     0.680 -51.50

ratchromosome:19:58453480:58453597:1Same_strand|Intronic_coding|ENSRNOT00000014492|ENSRNOG00000010744 ## ENSRNOG00000010744|protein_coding|Nrp1|Neuropilin-1 precursor (Vascular endothelial cell growth factor 165 receptor). [Source:UniProtKB/Swiss-Prot;Acc:Q9QWJ9]


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