logoSmall RNA from different tissues of two rat strains.


miR expression

block84799_cand

block84799_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block84799_cand 3arm0080002040
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block84799_cand 3arm000.0000000.00000.0000
block84799_cand relative cloning frequencies

block84799 [novel_lenNOK_cloningOK_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.001nono0.67/0.6818/19/0.000.0
0.0
11
0
3
0
10
30
3arm
1
nd
0.11
2
143nana
block84799 hairpin
  readsmiRBase family seed
seed     ----------------------------------------------------------------------------------------AGCCAGG--------------------     13novel
seed     ---------------------------------------------------------------------------------------AAGCCAG---------------------     1novel
  lencloning frequencies
   T2S1T4S1T5S1
      ---------------------------------------------------------------------------------------AAGCCAGGGGTTGAGCCC----------     18823
      --------------------------------------------------------------------------------------GAAGCCAGGGGTTGAGCCC----------     19--1
rat     ggaacaggctgggtctcaacccgctggtctcctcaggctaagggagctcccagccgactgatgatgagtcctgaatggcagtgtaggAAGCCAGGGGTTGAGCCCagctcgtgcc      
      *******************************************************************************************************************      
 -----------------------------------------------------------------------------------------------------------------------------ENSRNOT00000004609 ENSRNOG00000003276 Myo1d
rat     ((.((..((((((.((((((((.((((..((((((.((((.((((.(((.(((....))).....)))))))...))))..)).))))..))))))))))))))))))..)).))     0.570 -60.60

ratchromosome:10:68724217:68724331:1Opposite_strand|Boundary_non-coding|ENSRNOT00000044178|ENSRNOG00000003276 ## Opposite_strand|Intronic_coding|ENSRNOT00000004609|ENSRNOG00000003276 ## ENSRNOG00000003276|protein_coding|Myo1d|Myosin-Id (Myosin heavy chain myr 4). [Source:UniProtKB/Swiss-Prot;Acc:Q63357]


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