Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block853285_cand

block853285_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block853285_cand 5arm	0	0	0	0	0	0	0	0	1	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block853285_cand 5arm	0	0	0	0	0	0	0	0	0.000	0

block853285_cand relative cloning frequencies

block853285 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.52/0.52	23/23/1.00	0.0	0.0	1	0	1	0	16	5	5arm	1	nd	0.17	2	1	1	na	na

Families
Member of family novel230 (seed UCCCCAA): block853285_cand, sblock7818_cand

block853285 hairpin

		reads	miRBase family seed
seed	----------------------UCCCCAA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	---------------------TTCCCCAAAATGCAACCTTCCCC---------------------------------------------------------------	23	1
rat	-----CCGGAATCTGGTGTTTTTCCCCAAAATGCAACCTTCCCCGCCGCTTCTGCTCGCGCCTCCGGTGAGGGATGCATTTTGGGACGACCTCATCTTGAGCTCGGT
mouse	GGTTCACGAGATCTGGAGTTTTTCCCCAAAAT---------------GTTTCCGCTCGAGCCTCCGGTGCGGGTTGCATTTTGGGACGACCTCATCTTG--------
	** ************* * * * ****** * *************************
rat	((((..((.((((......(((((((((((.(((((.(((.(((........)))....))).))))).))))))))))).......))))..))..)))).	0.900 -40.92
mouse	......((((((..((.((.....(((((((( ((.((((((((......))).)))))..))))))))))))..))..))))))	0.995 -30.70

rat	chromosome:1:66179902:66180003:-1	intergenic ## {SimpF: oe = 0.90 0 CpG}
mouse	chromosome:7:6108004:6108087:1	intergenic ## {SimpF: oe = 0.94 1 CpG}

©2008 InteRNA Genomics B.V.