logoSmall RNA from different tissues of two rat strains.


miR expression

block885321_cand

block885321_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block885321_cand 5arm0000020000
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block885321_cand 5arm000000.0000000
block885321_cand relative cloning frequencies

block885321 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.003nono0.38/0.3821/21/1.000.0
0.0
2
0
1
0
22
2
5arm
1
nd
0.14
2
21nana
block885321 hairpin
  readsmiRBase family seed
seed     -----------------------GUCAAUU---------------------------------------------------------------------------     2novel
  lencloning frequencies
   T3S2
      ----------------------AGTCAATTGAGAGTGCTAAGT--------------------------------------------------------------     212
rat     ctttatatgtctttccttatggAGTCAATTGAGAGTGCTAAGTgctaacagataaaatgctacttagcatttcatgtgaccttgacaagaaaagagcatgttcag      
      *********************************************************************************************************      
 -------------------------------------------------------------------------------------------------------------------ENSRNOT00000026714 ENSRNOG00000019662 NP_001101960.1
rat     ((..((((((((((.(((..((.((((..(((((.((((((((((.............)).)))))))))))))..))))))....))).))))).)))))..))     0.970 -29.52

ratchromosome:1:138096819:138096923:-1Opposite_strand|Intronic_coding|ENSRNOT00000026714|ENSRNOG00000019662 ## ENSRNOG00000019662|protein_coding|NP_001101960.1|transmembrane 6 superfamily member 1 [Source:RefSeq_peptide;Acc:NP_001101960]


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