miR-Intess: block88667

block88667_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	13	13	3arm	1	nd	0.14	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------CUCAUCA---------------------------	1	novel
		len	cloning frequencies
			T5S2
	------------------------------------------------------------------------------ACTCATCATTCCCCAGAAACTT-------------	22	1
rat	CTGAACACCATACAGAAAACTTGTTTTGGGGAATTTGATAGTTATTGATGTACATCTG-TAAACTGATGACAGACATAACTCATCATTCCCCAGAAACTTTTTTTGGTTACAG
human	-----------------------TTTTGGGGAATTTGATAGTTATTGATGTGCATCTGTTAAACTGATGACAGACATAACTCATCATTCCCCAGAAACCTTTTTTGATTAC--
mouse	-------------------CTTGTTTTGGGGAATTTGATAGTTATTGATGTGCATCTG-TAAACTGATGACAGACATAACTCATCATTCCCCAGAAACTT-------------
	************************** ** ************************************* *
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000013387 ENSRNOG00000009819 Vezf1_predicted
rat	(((...((((...((((((....((((((((((..((((((((((...(((.((((.. ......)))))))...)))))).))))))))))))))..))))))))))..)))	0.980 -33.50
human	((((((((((..((((((((((...(((.((((.((...)).)))))))...)))))).))))))))))))))...............	0.990 -27.10
mouse	....((((((((((..((((((((((...(((.((((.. ......)))))))...)))))).))))))))))))))....	1.000 -28.10

rat	chromosome:10:76343719:76343830:1	Same_strand\|Boundary_non-coding\|ENSRNOT00000055705\|ENSRNOG00000009819 ## Same_strand\|Intronic_non-coding\|ENSRNOT00000013387\|ENSRNOG00000009819 ## ENSRNOG00000009819\|protein_coding\|Vezf1_predicted\|similar to splicing factor, arginine/serine-rich 1 (ASF/SF2) (LOC689890), mRNA [Source:RefSeq_dna;Acc:NM_001109552]
human	chromosome:17:53436410:53436497:-1	Same_strand\|Exonic_non-coding\|ENST00000258962\|ENSG00000136450\|protein_coding\|Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing factor SF2, P33 subunit)(Alternative-splicing factor 1)(ASF-1) [Source:UniProtKB/Swiss-Prot;Acc:Q07955]
mouse	chromosome:11:87864301:87864452:1	Same_strand\|Exonic_non-coding\|ENSMUST00000079866\|ENSMUSG00000018379\|protein_coding\|splicing factor, arginine/serine-rich 1 (ASF/SF2) Gene [Source:MGI (curated);Acc:Sfrs1-001]