block931792_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block931792_cand 5arm | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block931792_cand 5arm | 0 | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 |
block931792 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.52/0.52 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 7 | 1 | 5arm | 1 | nd | 0.22 | 3 | 1 | 1 | na | na |
| Member of family miR-15b/16/195/322/497 (seed AGCAGCA): rno-mir-322, rno-mir-195, rno-mir-15b, rno-mir-497, rno-mir-16, block864194_cand, block931792_cand, block2069771_cand |
| reads | miRBase family seed | ||
| seed | --------AGCAGCA------------------------------------------------------------------ | 1 | miR-15b/16/195/322/497 |
| len | cloning frequencies | ||
| T3S2 | |||
| -------GAGCAGCAGCTTAGGGAATTGCA--------------------------------------------------- | 23 | 1 | |
| rat | TATGACAGAGCAGCAGCTTAGGGAATTGCAGAAAACTGCTTCTAATTTCCACTGAGAAACTGACAAACACCTCTCTTTCAT | ||
| human | -------GAGCAGCAGCTTAGGGAATTGCAGAAAACTGCTTCTAATTTCCACTGAGAAGCTGACAAACACCTCTC------ | ||
| *************************************************** **************** | |||
| ------------------------------------------------------------------------------------------- | ENSRNOT00000022426 ENSRNOG00000016280 Btrc | ||
| rat | .((((.(((((((...(((((((((..((((....)))).......)))).)))))...)))..........)))).)))) | 0.990 -20.10 | |
| human | ...((((..(((((((((..((((....)))).......)))).)))))..))))............. | 1.000 -20.00 |
| rat | chromosome:1:250654012:250654092:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000022426|ENSRNOG00000016280 ## ENSRNOG00000016280|protein_coding|Btrc|beta-transducin repeat containing protein [Source:RefSeq_peptide;Acc:NP_001007149] |
| human | chromosome:10:103257247:103257367:-1 | Opposite_strand|Intronic_coding|ENST00000370187|ENSG00000166167|protein_coding|F-box/WD repeat-containing protein 1A (F-box and WD repeats protein beta-TrCP)(E3RSIkappaB)(pIkappaBalpha-E3 receptor subunit) [Source:UniProtKB/Swiss-Prot;Acc:Q9Y297] |
©2008 InteRNA Genomics B.V.