logoSmall RNA from different tissues of two rat strains.


miR expression

block93282_cand

block93282_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block93282_cand 3arm0000000001
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block93282_cand 3arm0000000000.000
block93282_cand relative cloning frequencies

block93282 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.006nono0.55/0.5520/20/1.000.0
0.0
1
0
1
0
8
11
3arm
1
nd
0.20
2
11nana
block93282 hairpin
  readsmiRBase family seed
seed     --------------------------------------------------------GGAAGUC--------------------     1novel
  lencloning frequencies
   T5S2
      -------------------------------------------------------GGGAAGTCCTTCCTGAAGTC--------     201
rat     gagctgggctgcagccaggaccacatcccatccagccttcctttgctcaatatttGGGAAGTCCTTCCTGAAGTCtaacctca      
      ***********************************************************************************      
 ---------------------------------------------------------------------------------------------ENSRNOT00000015988 ENSRNOG00000011475 Snip
 ---------------------------------------------------------------------------------------------ENSRNOT00000016070 ENSRNOG00000011475 Snip
 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000055405 ENSRNOG00000036894 Mel13
rat     (((.((((((.(((..(((((....(((((...(((........))).......))))).)))))..))).))))))..))).     1.000 -26.20

ratchromosome:10:86314708:86314790:1Opposite_strand|Intronic_coding|ENSRNOT00000016070|ENSRNOG00000011475 ## Same_strand|Intronic_coding|ENSRNOT00000055405|ENSRNOG00000036894 ## ENSRNOG00000036894|protein_coding|Mel13|CDGSH iron sulfur domain 3 Gene [Source:MGI (curated);Acc:Mel13-002] ## ENSRNOG00000011475|protein_coding|Snip|p130Cas-associated protein (p140Cap) (SNAP-25-interacting protein) (SNIP). [Source:UniProtKB/Swiss-Prot;Acc:Q9QXY2]


©2008 InteRNA Genomics B.V.