logoSmall RNA from different tissues of two rat strains.


miR expression

block985722_cand

block985722_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block985722_cand 3arm0000002000
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block985722_cand 3arm0000000.000000
block985722_cand relative cloning frequencies

block985722 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.008nono0.48/0.4821/21/1.000.0
0.0
2
0
1
0
7
9
3arm
1
nd
0.14
2
21nana
block985722 hairpin
  readsmiRBase family seed
seed     -----------------------------------------------------------------ACCAAAU--------------------     2novel
  lencloning frequencies
   T4S1
      ----------------------------------------------------------------GACCAAATATGACGCTTGGAG-------     212
rat     taggtgtcccatctttgctagtctttatttggtcacttagatcttccagtccctcagggtccagGACCAAATATGACGCTTGGAGggcctaa      
      ********************************************************************************************      
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000028546 ENSRNOG00000021027 Dbp
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000042680 ENSRNOG00000021027 Dbp
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000052152 ENSRNOG00000021027 Dbp
rat     ((((...(((.(((..((..(((..(((((((((.((..((((((..........)))))).))))))))))).)))))..)))))))))).     1.000 -30.20

ratchromosome:1:96174145:96174236:1Same_strand|Intronic_coding|ENSRNOT00000052152|ENSRNOG00000021027 ## ENSRNOG00000021027|protein_coding|Dbp|D site-binding protein (Albumin D box-binding protein) (Albumin D- element-binding protein) (D site albumin promoter-binding protein 1). [Source:UniProtKB/Swiss-Prot;Acc:P16443]


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