miR-Intess: block99018

block99018_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block99018_cand 5arm	0	0	0	0	0	1	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block99018_cand 5arm	0	0	0	0	0	0.000	0	0	0	0

block99018 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.67/0.67	21/21/1.00	0.0	0.0	1	0	1	0	15	14	5arm	1	nd	0.14	3	1	1	na	na

Families
Member of family novel227 (seed CCUCAGG): block99018_cand, block104015_cand

		reads	miRBase family seed
seed	----------------CCUCAGG---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	---------------GCCTCAGGTGGCCGAAGCTCT--------------------------------------------------------------------------	21	1
rat	ggggacaaaagaaaaGCCTCAGGTGGCCGAAGCTCTaagaccccatcatcacccagacttgagggttccctagagttactgcagatatatctgaggcgctctggtccccc
	**************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000014508 ENSRNOG00000010557 Smarcd2
rat	((((((...(((...((((((((((((...(((((((.(((((((...((.....))..)).)))))...)))))))...)).....))))))))))..))).)))))).	1.000 -46.10

rat

chromosome:10:95662664:95662773:1

Opposite_strand|Intronic_coding|ENSRNOT00000014508|ENSRNOG00000010557 ## ENSRNOG00000010557|protein_coding|Smarcd2|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 (60 kDa BRG-1/Brm-associated factor subunit B) (BRG1-associated factor 60B). [Source:UniProtKB/Swiss-Prot;Acc:O54772]

miR-Intess™

block99018_cand

block99018 [novel_randfoldOK]