hsa-mir-18b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-18b 5arm | 6 | 5 | 0 | 4 | 43 | 27 | 2 | 4 | 4 | 3 |
| hsa-mir-18b 3arm | 2 | 1 | 0 | 1 | 17 | 25 | 0 | 4 | 3 | 2 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-18b 5arm | 0.000 | 0.000 | 0 | 0.000 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 |
| hsa-mir-18b 3arm | 0.000 | 0.000 | 0 | 0.000 | 0.001 | 0.002 | 0 | 0.000 | 0.000 | 0.000 |
sblock12718 (miRBaseHomolog hsa-mir-18b) [miRBaseHomolog_lenNOK_cloningHIGH_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-18b | 0.123 | no | no | 0.40/0.58 | 18/24/0.24 | 0.0 0.0 0.8 | 0.0 0.4 2.1 | 1 65 35 | 0 0 0 | 1 9 8 | 0 0 0 | 2 26 24 | 25 2 14 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.40 0.16 0.40 | 5 1 3 | 153 | 9 | 1 | 2 |
| Located in cluster 86: rno-mir-363, rno-mir-92a, rno-mir-19b, rno-mir-20b, hsa-mir-18b, rno-mir-17 |
| Member of family miR-18a (seed AAGGUGC): hsa-mir-18b, rno-mir-18a |
| reads | miRBase family seed | ||||||||||
| seed | ---------------------------------------AAGGUGC------------------------------------------------------------------------------------------- | 95 | miR-18a | ||||||||
| seed | -------------------------------------------------------------------------------ACUGCCC--------------------------------------------------- | 30 | novel | ||||||||
| seed | --------------------------------------------------------------------------------CUGCCCU-------------------------------------------------- | 19 | novel | ||||||||
| seed | ----------------------------------------------------------------------------------GCCCUAA------------------------------------------------ | 6 | novel | ||||||||
| seed | ----------------------------------------AGGUGCA------------------------------------------------------------------------------------------ | 2 | novel | ||||||||
| seed | ---------------UCCUUGU------------------------------------------------------------------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------TAAGGTGCATCTAGTGCT--------------------------------------------------------------------------------- | 18 | 1 | 5 | 2 | 29 | 13 | 2 | 3 | 3 | 1 | |
| --------------------------------------TAAGGTGCATCTAGTGCTG-------------------------------------------------------------------------------- | 19 | 4 | - | 2 | 11 | 12 | - | - | 1 | 2 | |
| ------------------------------------------------------------------------------TACTGCCCTAAATGCCCCT---------------------------------------- | 19 | - | - | - | 3 | 3 | - | 2 | - | 1 | |
| ------------------------------------------------------------------------------TACTGCCCTAAATGCCCCTTCTC------------------------------------ | 23 | - | - | - | 4 | 4 | - | - | 1 | - | |
| -------------------------------------------------------------------------------ACTGCCCTAAATGCCCCTTCTC------------------------------------ | 22 | - | - | 1 | 1 | 5 | - | - | - | - | |
| ------------------------------------------------------------------------------TACTGCCCTAAATGCCCC----------------------------------------- | 18 | - | - | - | 2 | 4 | - | - | - | - | |
| ------------------------------------------------------------------------------TACTGCCCTAAATGCCCCTTCT------------------------------------- | 22 | 1 | - | - | - | 3 | - | - | - | 1 | |
| -------------------------------------------------------------------------------ACTGCCCTAAATGCCCCTT--------------------------------------- | 19 | - | - | - | 3 | - | - | 1 | - | - | |
| -------------------------------------------------------------------------------ACTGCCCTAAATGCCCCT---------------------------------------- | 18 | 1 | - | - | 1 | - | - | 1 | - | - | |
| ---------------------------------------------------------------------------------TGCCCTAAATGCCCCTTCTC------------------------------------ | 20 | - | - | - | - | 2 | - | - | 1 | - | |
| --------------------------------------TAAGGTGCATCTAGTGCTGT------------------------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | 1 | - | - | |
| --------------------------------------TAAGGTGCATCTAGTGCTGTTAG---------------------------------------------------------------------------- | 23 | - | - | - | 1 | 1 | - | - | - | - | |
| -------------------------------------------------------------------------------ACTGCCCTAAATGCCCCTTC-------------------------------------- | 20 | - | - | - | 1 | 1 | - | - | - | - | |
| ---------------------------------------------------------------------------------TGCCCTAAATGCCCCTTC-------------------------------------- | 18 | - | - | - | 1 | 1 | - | - | - | - | |
| ---------------------------------------AAGGTGCATCTAGTGCTGT------------------------------------------------------------------------------- | 19 | - | - | - | 2 | - | - | - | - | - | |
| -------------------------------------------------------------------------------ACTGCCCTAAATGCCCCTTCT------------------------------------- | 21 | - | - | - | - | 1 | - | - | 1 | - | |
| -------------------------------------------------------------------------------ACTGCCCTAAATGCCCCTTCTCG----------------------------------- | 23 | - | - | - | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------------TACTGCCCTAAATGCCCCTT--------------------------------------- | 20 | - | - | - | 1 | - | - | - | - | - | |
| --------------CTCCTTGTAATGTGTCTCTT------------------------------------------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------------TGCCCTAAATGCCCCTTCTCGCAC-------------------------------- | 24 | - | 1 | - | - | - | - | - | - | - | |
| rat | ------------TGCTCCTTGTAATGTGTCTCTTGTGTTAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTATAATCTACTGCCCTAAATGCCCCTTCTCGCACAGGCTACTGCTTACTCCGCA------------ | ||||||||||
| human | ATGCTTTTGAGCTGCTTCTTATAATGTGTCTCTTGTGTTAAGGTGCATCTAGTGCAGTTAGTGAAGCAGCTTAGAATCTACTGCCCTAAATGCCCCTTCTGGCACAGGCTGCCTAATATACAGCATTTTAAAAGTAT | ||||||||||
| mouse | --------------------------------------TAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTACAATCTACTGCCCTAAATGCCCCTTC-------------------------------------- | ||||||||||
| ***************** ***************** ************************* | |||||||||||
| ..... ................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.............. ..... | ENSRNOT00000063045 ENSRNOG00000041292 | ||||||||||
| rat | .((.....((((.((((..(((((((.((((.((((.(((.((((((.....))))))...............))).)))).))))...)))))))..)).))))))...)). | 0.830 -27.79 | |||||||||
| human | (((((((((((.((((...((((.((.((..((((((((((((.((((.(((.(((((..((.(((...)))...))..))))).))).)))).)))..)))))))))..)).)).)))).)))).))))))))))) | 0.999 -43.50 | |||||||||
| mouse | .((((.((((.(((.((.((..((((......)))).....)).)).))).)))).)))). | 0.692 -14.50 | |||||||||
| rat | chromosome:X:139741265:139741377:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000063045|ENSRNOG00000041292 ## Same_strand|Boundary_non-coding|ENSRNOT00000063045|ENSRNOG00000041292 ## ENSRNOG00000041292|miRNA|| |
| human | chromosome:X:133131704:133131840:-1 | intergenic ## {MIR: hsa-mir-18b} |
| mouse | chromosome:X:50095474:50095626:-1 | Same_strand|Boundary_non-coding|ENSMUST00000103923|ENSMUSG00000077111|miRNA|mmu-mir-18b [Source:miRBase;Acc:MI0005483] ## {MIR: mmu-mir-18b} |
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