rno-let-7b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-let-7b 5arm | 15618 | 9361 | 2757.500 | 3670 | 7010 | 5148 | 2705 | 5207 | 9843 | 17339.500 |
| rno-let-7b 3arm | 354 | 227 | 66 | 92 | 109 | 42 | 56 | 74 | 163 | 88 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-let-7b 5arm | 0.519 | 0.409 | 0.149 | 0.218 | 0.341 | 0.390 | 0.210 | 0.274 | 0.649 | 1.154 |
| rno-let-7b 3arm | 0.012 | 0.010 | 0.004 | 0.005 | 0.005 | 0.003 | 0.004 | 0.004 | 0.011 | 0.006 |
sblock11470 (miRBase rno-let-7b) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-let-7b | 0.001 | no | no | 0.32/0.71 | 18/26/0.58 | 0.0 0.0 0.0 1.0 0.0 | 1.9 0.0 2.5 0.8 1.0 | 47997 1 64 4 567 | 0 0 0 0 0 | 10 1 8 2 10 | 0 0 0 0 0 | 6 23 28 14 3 | 11 -3 -13 6 17 | 5arm 5arm_loop 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.00 0.32 0.29 0.16 0.00 | 0 4 4 2 0 | 79931 | 10 | 2 | 2 |
| Located in cluster 79: rno-let-7c, rno-let-7b |
| Member of family let-7b* (seed UAUACAA): rno-let-7a, rno-let-7f, rno-let-7c, rno-let-7b, rno-let-7f-1 |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------GAGGUAG----------------------------------------------------------------------------------------------- | 77922 | let-7a/7b/7c/7d/7e/7f/7i/miR-98 | |||||||||
| seed | ----------------------------------------------------------------------------------UAUACAA--------------------------------------- | 1253 | let-7b* | |||||||||
| seed | ---------------------------AGGUAGU---------------------------------------------------------------------------------------------- | 579 | miR-196a/196b/196c | |||||||||
| seed | ------------------------------------------------CAGGGCA------------------------------------------------------------------------- | 128 | novel | |||||||||
| seed | -----------------------------------------------------------------------------------AUACAAC-------------------------------------- | 9 | novel | |||||||||
| seed | -------------------------UGAGGUA------------------------------------------------------------------------------------------------ | 6 | novel | |||||||||
| seed | -------------------------------------------------AGGGCAG------------------------------------------------------------------------ | 6 | novel | |||||||||
| seed | ------------------------------UAGUAGG------------------------------------------------------------------------------------------- | 6 | novel | |||||||||
| seed | ---------------------GGGGUGA---------------------------------------------------------------------------------------------------- | 4 | novel | |||||||||
| seed | ----------------------------GGUAGUA--------------------------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | ------------------------------------------------------------------------------------UACAACC------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------------------------------------------------CCGA--AGA-------------------------------------------------- | 2 | novel | |||||||||
| seed | -----------------------------GUAGUAG-------------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | -------------------------------------------------------------------------------AACUAUA------------------------------------------ | 2 | novel | |||||||||
| seed | ---------------------------------------------------------------------------------CUAUACA---------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------GGGUGAG--------------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------------------GGUGAGG-------------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------------------------------------------------CGA--AGAU------------------------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------------------------------------------------A--AGAUAA----------------------------------------------- | 1 | novel | |||||||||
| seed | -------------------------------------------GGUUUCA------------------------------------------------------------------------------ | 1 | novel | |||||||||
| seed | -------------------------------------------------------GUGAUGU------------------------------------------------------------------ | 1 | miR-466c | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| rno-let-7b | -------------------------TGAGGTAGTAGGTTGTGTGGTT--------------------------------------------------------------------------------- | 22 | 4173 | 2726 | 759 | 939 | 2019 | 1404 | 781 | 1208 | 3578 | 5675 |
| -------------------------TGAGGTAGTAGGTTGTGT------------------------------------------------------------------------------------- | 18 | 3587 | 2159 | 827 | 1215 | 1908 | 1355 | 523 | 1451 | 1719 | 2705 | |
| -------------------------TGAGGTAGTAGGTTGTGTG------------------------------------------------------------------------------------ | 19 | 3042 | 1819 | 496 | 581 | 1519 | 1084 | 655 | 1233 | 1715 | 3154 | |
| -------------------------TGAGGTAGTAGGTTGTGTGG----------------------------------------------------------------------------------- | 20 | 2109 | 1191 | 280 | 364 | 603 | 489 | 275 | 614 | 922 | 2084 | |
| -------------------------TGAGGTAGTAGGTTGTGTGGT---------------------------------------------------------------------------------- | 21 | 1753 | 988 | 242 | 298 | 582 | 452 | 244 | 361 | 1136 | 2072 | |
| -------------------------TGAGGTAGTAGGTTGTGTGGTTTC------------------------------------------------------------------------------- | 24 | 434 | 228 | 49 | 119 | 182 | 200 | 71 | 158 | 329 | 958 | |
| -------------------------TGAGGTAGTAGGTTGTGTGGTTT-------------------------------------------------------------------------------- | 23 | 313 | 160 | 89 | 124 | 140 | 121 | 127 | 156 | 354 | 528 | |
| ---------------------------------------------------------------------------------CTATACAACCTACTGCCTTCC-------------------------- | 21 | 169 | 96 | 37 | 46 | 44 | 14 | 21 | 21 | 85 | 46 | |
| ---------------------------------------------------------------------------------CTATACAACCTACTGCCT----------------------------- | 18 | 91 | 71 | 19 | 27 | 45 | 16 | 14 | 23 | 39 | 15 | |
| rno-let-7b* | ---------------------------------------------------------------------------------CTATACAACCTACTGCCTTCCC------------------------- | 22 | 55 | 18 | 5 | 10 | 9 | 5 | 14 | 15 | 22 | 3 |
| --------------------------GAGGTAGTAGGTTGTGTGGTT--------------------------------------------------------------------------------- | 21 | 27 | 20 | 3 | 6 | 12 | 10 | 5 | 6 | 22 | 44 | |
| --------------------------GAGGTAGTAGGTTGTGTGGT---------------------------------------------------------------------------------- | 20 | 29 | 10 | 1 | 10 | 4 | 7 | 7 | 7 | 19 | 40 | |
| --------------------------GAGGTAGTAGGTTGTGTG------------------------------------------------------------------------------------ | 18 | 40 | 10 | 1 | 9 | 9 | 5 | 4 | 6 | 25 | 20 | |
| --------------------------GAGGTAGTAGGTTGTGTGG----------------------------------------------------------------------------------- | 19 | 33 | 11 | 6 | 3 | 11 | 6 | 6 | 5 | 15 | 27 | |
| ---------------------------------------------------------------------------------CTATACAACCTACTGCCTTC--------------------------- | 20 | 21 | 19 | 2 | 4 | 5 | 4 | 4 | 7 | 13 | 12 | |
| ---------------------------------------------------------------------------------CTATACAACCTACTGCCTT---------------------------- | 19 | 11 | 13 | - | 2 | 3 | 2 | 3 | 4 | 2 | 9 | |
| -----------------------------------------------TCAGGGCAGTGATGTCGCCCCTCC--------------------------------------------------------- | 24 | 26 | 6 | - | - | 6 | 2 | 2 | - | - | 1 | |
| -----------------------------------------------TCAGGGCAGTGATGTCGC--------------------------------------------------------------- | 18 | 11 | 8 | - | - | 5 | 1 | 2 | - | - | - | |
| --------------------------GAGGTAGTAGGTTGTGTGGTTTC------------------------------------------------------------------------------- | 23 | 5 | 3 | - | - | 2 | 4 | - | 1 | 1 | 11 | |
| -----------------------------------------------TCAGGGCAGTGATGTCGCCCC------------------------------------------------------------ | 21 | 9 | 4 | 1 | - | 2 | - | 1 | - | 1 | 1 | |
| ---------------------------------------------------------------------------------CTATACAACCTACTGCCTTCCCT------------------------ | 23 | 1 | 6 | 3 | - | 2 | 1 | - | 2 | - | 2 | |
| -----------------------------------------------TCAGGGCAGTGATGTCGCCCCT----------------------------------------------------------- | 22 | 10 | - | - | - | 2 | 1 | 1 | - | - | - | |
| -----------------------------------------------TCAGGGCAGTGATGTCGCC-------------------------------------------------------------- | 19 | 5 | 3 | 1 | - | 1 | 1 | - | - | - | 2 | |
| -------------------------TGAGGTAGTAGGTTGTGTGGTTTCA------------------------------------------------------------------------------ | 25 | 2 | 3 | - | - | 1 | - | 1 | - | 2 | 4 | |
| --------------------------GAGGTAGTAGGTTGTGTGGTTT-------------------------------------------------------------------------------- | 22 | 1 | 3 | 1 | 1 | - | - | - | 1 | - | 4 | |
| -----------------------------------------------TCAGGGCAGTGATGTCGCCC------------------------------------------------------------- | 20 | 3 | 3 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------TCAGGGCAGTGATGTCGCCCCTC---------------------------------------------------------- | 23 | 2 | 3 | - | - | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------------------------TATACAACCTACTGCCTTCC-------------------------- | 20 | 3 | - | - | 3 | - | - | - | - | - | - | |
| -----------------------------GTAGTAGGTTGTGTGGTT--------------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | 3 | 2 | |
| ------------------------GTGAGGTAGTAGGTTGTGT------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | - | 1 | - | - | - | 1 | |
| ------------------------------------------------CAGGGCAGTGATGTCGCCCC------------------------------------------------------------ | 20 | - | 1 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------------------------ATACAACCTACTGCCTTCC-------------------------- | 19 | - | 1 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------------TAACTATACAACCTACTGCCTTCCC------------------------- | 25 | - | 2 | - | - | - | - | - | - | - | - | |
| ------------------------GTGAGGTAGTAGGTTGTG-------------------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | 1 | |
| --------------------CGGGGTGAGGTAGTAGGTTG---------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | 2 | - | - | - | - | |
| ----------------------------------------------------------------------------------TATACAACCTACTGCCTTCCC------------------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| ----------------------------GGTAGTAGGTTGTGTGGTT--------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | 1 | |
| --------------------CGGGGTGAGGTAGTAGGTTGT--------------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 2 | - | - | - | - | |
| ---------------------------------------------------------------------------------CTATACAACCTACTGCCTTCCCTG----------------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------------TGAGGTAGTAGGTTGTGTGGTTTCAG----------------------------------------------------------------------------- | 26 | - | - | - | - | - | 1 | - | - | - | - | |
| ------------------------------------------------CAGGGCAGTGATGTCGCCCCTCCG-------------------------------------------------------- | 24 | - | - | - | - | - | - | - | - | - | 1 | |
| ------------------------------------------------CAGGGCAGTGATGTCGCCC------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| ---------------------GGGGTGAGGTAGTAGGTTGT--------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------AGGTAGTAGGTTGTGTGGTTTC------------------------------------------------------------------------------- | 22 | - | - | - | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------------------ACTATACAACCTACTGCCTT---------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------------CCGA--AGATAACTATACAACCT------------------------------------ | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| ------------------------------------------------CAGGGCAGTGATGTCGCCCCTCC--------------------------------------------------------- | 23 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------TCCGA--AGATAACTATACAACCT------------------------------------ | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------TGGTTTCAGGGCAGTGATG------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------AGTGATGTCGCCCCTCCGA--AGA-------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------GTGAGGTAGTAGGTTGTGTGGTT--------------------------------------------------------------------------------- | 23 | - | - | - | - | 1 | - | - | - | - | - | |
| --------------------------------------------------------------------TCCGA--AGATAACTATACAACC------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------AGGTAGTAGGTTGTGTGGT---------------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------------CAGGGCAGTGATGTCGCC-------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------GA--AGATAACTATACAACCT------------------------------------ | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------GGGTGAGGTAGTAGGTTGT--------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------------TATACAACCTACTGCCTTC--------------------------- | 19 | - | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------AGGTAGTAGGTTGTGTGGTTT-------------------------------------------------------------------------------- | 21 | - | - | - | 1 | - | - | - | - | - | - | |
| rat | -------------------GCGGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGCAGTGATGTCGCCCCTCCGA--AGATAACTATACAACCTACTGCCTTCCCTGA---------------------- | |||||||||||
| human | CACCAAGACCGACTGCCCTTTGGGGTGAGGTAGTAGGTTGTATAGTTT-GGGGCTCTG-------CCCTGCTATGGGATAACTATACAATCTACTGTCTTTCCTGAAGTGGCTGTAATATCTGCGGTG | |||||||||||
| mouse | -------------------------TGAGGTAGTAGGTTGTGTGGTTTCAGGGCAGTGATGTTGCCCCTCCGA--AGATAACTATACAACCTACTGCCTTC--------------------------- | |||||||||||
| **************** * **** **** ** **** * * ************* ****** *** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053759 ENSRNOG00000035636 rno-let-7b | |||||||||||
| rat | .(((((.(((((((((((((((((((((((((((..(((....))))))).... .)).)))))))))))))))))))))))))). | 1.000 -47.60 | ||||||||||
| human | ((((.(((...((.((((((..(((.(((..((((((((((((((((( (((((...) ))))).........))))))))))))))))..))))))..))).))).))....)))..)))) | 0.910 -54.30 | ||||||||||
| mouse | .(((((((((((((((((((((((.((((((.....))))))....)) )....)))))))))))))))))))). | 0.866 -39.00 | ||||||||||
| rat | chromosome:7:123701205:123701289:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053759|ENSRNOG00000035636 ## Same_strand|Boundary_non-coding|ENSRNOT00000053759|ENSRNOG00000035636 ## ENSRNOG00000035636|miRNA|rno-let-7b|rno-let-7b [Source:miRBase;Acc:MI0000829] ## {MIR: rno-let-7b} |
| human | chromosome:22:44887271:44887390:1 | Same_strand|Boundary_non-coding|ENST00000362116|ENSG00000198986|miRNA|hsa-let-7a-3 [Source:miRBase;Acc:MI0000062] ## {MIR: hsa-let-7a-3} |
| mouse | chromosome:15:85537729:85537853:1 | Same_strand|Boundary_non-coding|ENSMUST00000083630|ENSMUSG00000065564|miRNA|mmu-let-7b [Source:miRBase;Acc:MI0000558] ## {MIR: mmu-let-7b} |
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