rno-let-7d
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-let-7d 5arm | 8840 | 5002 | 2522 | 2773 | 5130 | 3220 | 1330 | 4327 | 3103 | 4044 |
| rno-let-7d 3arm | 1714 | 273 | 389 | 776 | 1482 | 513 | 908 | 863 | 392 | 211 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-let-7d 5arm | 0.294 | 0.218 | 0.137 | 0.164 | 0.250 | 0.244 | 0.103 | 0.228 | 0.205 | 0.269 |
| rno-let-7d 3arm | 0.057 | 0.012 | 0.021 | 0.046 | 0.072 | 0.039 | 0.071 | 0.045 | 0.026 | 0.014 |
sblock5324 (miRBase rno-let-7d) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-let-7d | 0.001 | no | no | 0.38/0.56 | 18/24/0.78 | 0.0 0.0 | 0.8 1.0 | 25287 3815 | 0 0 | 10 10 | 0 0 | 13 9 | 10 19 | 5arm 3arm | 1 1 | nd nd | 0.05 0.05 | 1 1 | 47812 | 10 | 2 | 2 |
| Member of family let-7a/7b/7c/7d/7e/7f/7i/miR-98 (seed GAGGUAG): rno-let-7a, rno-let-7f, rno-let-7e, rno-let-7a, rno-let-7f, rno-let-7d, rno-let-7c, rno-let-7b, rno-mir-98, rno-let-7c, rno-let-7i, block113823_cand, block2634835_cand |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------GAGGUAG---------------------------------------------------------------------------------------- | 39865 | let-7a/7b/7c/7d/7e/7f/7i/miR-98 | |||||||||
| seed | --------------------------------------------------------------------------------UAUACGA---------------------------------- | 7324 | let-7d* | |||||||||
| seed | ---------------------------AGGUAGU--------------------------------------------------------------------------------------- | 404 | miR-196a/196b/196c | |||||||||
| seed | ---------------------------------------------------------------------------------AUACGAC--------------------------------- | 191 | novel | |||||||||
| seed | -----------------------------GUAGUAG------------------------------------------------------------------------------------- | 9 | novel | |||||||||
| seed | -------------------------AGAGGUA----------------------------------------------------------------------------------------- | 8 | novel | |||||||||
| seed | ----------------------------------------------------------------------------------UACGACC-------------------------------- | 6 | novel | |||||||||
| seed | ----------------------------GGUAGUA-------------------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | ------------------------------UAGUAGG------------------------------------------------------------------------------------ | 2 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| rno-let-7d | -------------------------AGAGGTAGTAGGTTGCATAGTT-------------------------------------------------------------------------- | 22 | 2812 | 1783 | 828 | 913 | 1421 | 906 | 141 | 1264 | 1024 | 1378 |
| -------------------------AGAGGTAGTAGGTTGCATAGT--------------------------------------------------------------------------- | 21 | 2429 | 1281 | 667 | 694 | 1431 | 826 | 492 | 1153 | 918 | 1151 | |
| -------------------------AGAGGTAGTAGGTTGCATAG---------------------------------------------------------------------------- | 20 | 1597 | 885 | 454 | 467 | 1051 | 730 | 354 | 865 | 525 | 673 | |
| -------------------------AGAGGTAGTAGGTTGCAT------------------------------------------------------------------------------ | 18 | 1025 | 514 | 275 | 268 | 537 | 307 | 145 | 450 | 291 | 355 | |
| -------------------------AGAGGTAGTAGGTTGCATA----------------------------------------------------------------------------- | 19 | 768 | 387 | 170 | 225 | 520 | 325 | 127 | 404 | 220 | 340 | |
| rno-let-7d* | -------------------------------------------------------------------------------CTATACGACCTGCTGCCTTTCT-------------------- | 22 | 734 | 76 | 129 | 259 | 651 | 229 | 343 | 347 | 180 | 99 |
| -------------------------------------------------------------------------------CTATACGACCTGCTGCCT------------------------ | 18 | 372 | 73 | 94 | 177 | 355 | 103 | 197 | 183 | 75 | 42 | |
| -------------------------------------------------------------------------------CTATACGACCTGCTGCCTTTC--------------------- | 21 | 293 | 41 | 77 | 181 | 208 | 74 | 202 | 141 | 61 | 27 | |
| -------------------------------------------------------------------------------CTATACGACCTGCTGCCTT----------------------- | 19 | 232 | 47 | 58 | 111 | 187 | 83 | 119 | 131 | 50 | 25 | |
| -------------------------AGAGGTAGTAGGTTGCATAGTTT------------------------------------------------------------------------- | 23 | 117 | 96 | 96 | 171 | 108 | 77 | 47 | 115 | 74 | 94 | |
| --------------------------GAGGTAGTAGGTTGCATAGTT-------------------------------------------------------------------------- | 21 | 33 | 24 | 4 | 5 | 24 | 14 | 3 | 28 | 22 | 16 | |
| -------------------------------------------------------------------------------CTATACGACCTGCTGCCTTT---------------------- | 20 | 28 | 3 | 5 | 14 | 21 | 9 | 16 | 23 | 9 | 5 | |
| -------------------------------------------------------------------------------CTATACGACCTGCTGCCTTTCTT------------------- | 23 | 15 | 25 | 14 | 4 | 27 | 5 | 11 | 10 | 12 | 2 | |
| -------------------------AGAGGTAGTAGGTTGCATAGTTTT------------------------------------------------------------------------ | 24 | 13 | 15 | 14 | 13 | 6 | 7 | 8 | 11 | 8 | 9 | |
| --------------------------GAGGTAGTAGGTTGCATAGT--------------------------------------------------------------------------- | 20 | 23 | 11 | 4 | 4 | 14 | 11 | 4 | 12 | 6 | 10 | |
| --------------------------GAGGTAGTAGGTTGCATAG---------------------------------------------------------------------------- | 19 | 13 | 4 | 7 | 4 | 13 | 15 | 7 | 18 | 8 | 10 | |
| --------------------------------------------------------------------------------TATACGACCTGCTGCCTTTCT-------------------- | 21 | 23 | 5 | 1 | 12 | 17 | 3 | 5 | 14 | 3 | 7 | |
| --------------------------------------------------------------------------------TATACGACCTGCTGCCTTTC--------------------- | 20 | 11 | 1 | 7 | 7 | 10 | 2 | 9 | 7 | 2 | 2 | |
| --------------------------------------------------------------------------------TATACGACCTGCTGCCTT----------------------- | 18 | 3 | - | 4 | 9 | 4 | 3 | 2 | 4 | - | 1 | |
| --------------------------GAGGTAGTAGGTTGCATA----------------------------------------------------------------------------- | 18 | 6 | 1 | 1 | 5 | 2 | 1 | 1 | 3 | 2 | 5 | |
| --------------------------------------------------------------------------------TATACGACCTGCTGCCTTT---------------------- | 19 | 3 | 1 | - | 1 | 2 | 2 | 2 | 1 | - | - | |
| --------------------------GAGGTAGTAGGTTGCATAGTTT------------------------------------------------------------------------- | 22 | 1 | 1 | - | 1 | - | - | 1 | 2 | - | - | |
| ----------------------------GGTAGTAGGTTGCATAGTT-------------------------------------------------------------------------- | 19 | 1 | - | - | 1 | 2 | - | - | 1 | - | - | |
| ----------------------------GGTAGTAGGTTGCATAGT--------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | - | 1 | 1 | 1 | |
| ------------------------AAGAGGTAGTAGGTTGCATAGT--------------------------------------------------------------------------- | 22 | 1 | - | - | 1 | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------------ATACGACCTGCTGCCTTTC--------------------- | 19 | - | - | - | 1 | - | - | 1 | 1 | - | - | |
| -----------------------------GTAGTAGGTTGCATAGTT-------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | 1 | |
| ---------------------------AGGTAGTAGGTTGCATAGT--------------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | - | 1 | - | |
| ---------------------------------------------------------------------------------ATACGACCTGCTGCCTTTCT-------------------- | 20 | - | 1 | - | - | - | - | - | - | - | 1 | |
| ------------------------AAGAGGTAGTAGGTTGCATAGTT-------------------------------------------------------------------------- | 23 | - | - | 1 | - | - | - | - | - | - | - | |
| ------------------------AAGAGGTAGTAGGTTGCATAG---------------------------------------------------------------------------- | 21 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------------------TATACGACCTGCTGCCTTTCTT------------------- | 22 | - | - | - | - | - | - | 1 | - | - | - | |
| ---------------------------AGGTAGTAGGTTGCATAGTTT------------------------------------------------------------------------- | 21 | - | - | - | 1 | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------------ATACGACCTGCTGCCTTTCTT------------------- | 21 | - | - | - | - | - | - | - | 1 | - | - | |
| ------------------------AAGAGGTAGTAGGTTGCATA----------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| ------------------------AAGAGGTAGTAGGTTGCA------------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------AAGAGGTAGTAGGTTGCAT------------------------------------------------------------------------------ | 19 | - | - | 1 | - | - | - | - | - | - | - | |
| rat | ------------TGGGCTCCTAGGAAGAGGTAGTAGGTTGCATAGTTTTAGGGCAGAGATTTTGCCCACAAGGAGTTAACTATACGACCTGCTGCCTTTCTTAGGGCCTT----------- | |||||||||||
| human | ----------AATGGGTTCCTAGGAAGAGGTAGTAGGTTGCATAGTTTTAGGGCAGGGATTTTGCCCACAAGGAGGTAACTATACGACCTGCTGCCTTTCTTAGGGCCTTATT-------- | |||||||||||
| mouse | GCAAGAATAAAATGGGTTCCTAGGAAGAGGTAGTAGGTTGCATAGTTTTAGGGCAGAGATTTTGCCCACAAGGAGTTAACTATACGACCTGCTGCCTTTCTTAGGGCCTTATTATACCAGC | |||||||||||
| **** *************************************** ****************** ********************************** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053717 ENSRNOG00000035594 rno-let-7d | |||||||||||
| rat | .((((.(((((((.((((((((((((((.((((((...(((((((...)))))))..........)))))).))))))))))))))))))))))))). | 1.000 -51.32 | ||||||||||
| human | ((((((..((((((.(((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))))..)))))) | 0.895 -49.12 | ||||||||||
| mouse | ..........((((((..((((((.(((((((((((((((.((((((...(((((((...)))))))..........)))))).)))))))))))))))))))))..))))))........ | 0.875 -50.82 | ||||||||||
| rat | chromosome:17:22121894:22121991:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053717|ENSRNOG00000035594 ## Same_strand|Boundary_non-coding|ENSRNOT00000053717|ENSRNOG00000035594 ## ENSRNOG00000035594|miRNA|rno-let-7d|rno-let-7d [Source:miRBase;Acc:MI0000601] ## {MIR: rno-let-7d} |
| human | chromosome:9:95980929:95981031:1 | Same_strand|Boundary_non-coding|ENST00000362263|ENSG00000199133|miRNA|hsa-let-7d [Source:miRBase;Acc:MI0000065] ## {Repeats: dust 0 class=dust} ## {MIR: hsa-let-7d} |
| mouse | chromosome:13:48631373:48631493:-1 | Same_strand|Boundary_non-coding|ENSMUST00000083519|ENSMUSG00000065453|miRNA|mmu-let-7d [Source:miRBase;Acc:MI0000405] ## {MIR: mmu-let-7d} |
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