rno-let-7e
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-let-7e 5arm | 8100.500 | 6072.500 | 492 | 424 | 1366 | 767 | 643 | 1664 | 1848 | 2795 |
| rno-let-7e 3arm | 252 | 145 | 7 | 21 | 39 | 20 | 12 | 26 | 52 | 12 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-let-7e 5arm | 0.269 | 0.265 | 0.027 | 0.025 | 0.067 | 0.058 | 0.050 | 0.088 | 0.122 | 0.186 |
| rno-let-7e 3arm | 0.008 | 0.006 | 0.000 | 0.001 | 0.002 | 0.002 | 0.001 | 0.001 | 0.003 | 0.001 |
sblock1728 (miRBase rno-let-7e) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-let-7e | 0.001 | no | no | 0.39/0.63 | 18/24/0.75 | 0.0 0.0 0.0 | 1.0 1.4 2.1 | 13718 13 295 | 0 0 0 | 10 4 10 | 0 0 0 | 14 36 11 | 9 -15 8 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.05 0.67 0.06 | 1 6 1 | 24759 | 10 | 2 | 3 |
| Located in cluster 7: rno-mir-99b, rno-let-7e, rno-mir-125a |
| Member of family let-7a/7b/7c/7d/7e/7f/7i/miR-98 (seed GAGGUAG): rno-let-7a, rno-let-7f, rno-let-7e, rno-let-7a, rno-let-7f, rno-let-7d, rno-let-7c, rno-let-7b, rno-mir-98, rno-let-7c, rno-let-7i, block113823_cand, block2634835_cand |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------------GAGGUAG------------------------------------------------------------------------------------------ | 23951 | let-7a/7b/7c/7d/7e/7f/7i/miR-98 | |||||||||
| seed | -----------------------------------------------------------------------------UAUACGG--------------------------------------------- | 566 | let-7e* | |||||||||
| seed | ---------------------------------AGGUAGG----------------------------------------------------------------------------------------- | 188 | novel | |||||||||
| seed | ------------------------------------------------------AGGAAGA-------------------------------------------------------------------- | 17 | novel | |||||||||
| seed | ------------------------------------------------------------------------------AUACGGC-------------------------------------------- | 13 | novel | |||||||||
| seed | -------------------------------UGAGGUA------------------------------------------------------------------------------------------- | 5 | novel | |||||||||
| seed | ----------------------------------------------------------------------------CUAUACG---------------------------------------------- | 4 | novel | |||||||||
| seed | ----------------------------------GGUAGGA---------------------------------------------------------------------------------------- | 4 | novel | |||||||||
| seed | -------------------------------------------------------GGAAGAC------------------------------------------------------------------- | 3 | miR-7a/7b | |||||||||
| seed | ------------------------------------UAGGAGG-------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | --------------------------------------------------------------------------CACUAUA------------------------------------------------ | 2 | novel | |||||||||
| seed | -----------------------------------GUAGGAG--------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------------------------------------------------------ACUAUAC----------------------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------------------------------------ACACCCG-------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -------------------------------------AGGAGGU------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------TGAGGTAGGAGGTTGTATAG------------------------------------------------------------------------------ | 20 | 2338 | 2018 | 168 | 111 | 411 | 207 | 156 | 506 | 456 | 877 | |
| -------------------------------TGAGGTAGGAGGTTGTATAGT----------------------------------------------------------------------------- | 21 | 1779 | 1157 | 86 | 93 | 315 | 196 | 212 | 336 | 438 | 602 | |
| rno-let-7e | -------------------------------TGAGGTAGGAGGTTGTATAGTT---------------------------------------------------------------------------- | 22 | 1567 | 1153 | 92 | 77 | 254 | 129 | 55 | 319 | 438 | 614 |
| -------------------------------TGAGGTAGGAGGTTGTAT-------------------------------------------------------------------------------- | 18 | 1237 | 792 | 73 | 62 | 166 | 88 | 83 | 232 | 203 | 290 | |
| -------------------------------TGAGGTAGGAGGTTGTATA------------------------------------------------------------------------------- | 19 | 800 | 625 | 53 | 64 | 148 | 113 | 108 | 195 | 173 | 263 | |
| -------------------------------TGAGGTAGGAGGTTGTATAGTTG--------------------------------------------------------------------------- | 23 | 253 | 205 | 14 | 9 | 48 | 20 | 16 | 53 | 89 | 81 | |
| ----------------------------------------------------------------------------CTATACGGCCTCCTAGCTTTCCC------------------------------ | 23 | 100 | 59 | 4 | 4 | 16 | 11 | 5 | 11 | 25 | 2 | |
| -------------------------------TGAGGTAGGAGGTTGTATAGTTGA-------------------------------------------------------------------------- | 24 | 56 | 67 | 2 | 3 | 7 | 4 | 6 | 16 | 32 | 42 | |
| ----------------------------------------------------------------------------CTATACGGCCTCCTAGCTT---------------------------------- | 19 | 54 | 27 | - | 8 | 10 | 3 | 4 | 6 | 10 | 3 | |
| ----------------------------------------------------------------------------CTATACGGCCTCCTAGCT----------------------------------- | 18 | 48 | 34 | 2 | 2 | 7 | 5 | - | 5 | 6 | 4 | |
| --------------------------------GAGGTAGGAGGTTGTATAG------------------------------------------------------------------------------ | 19 | 19 | 22 | 1 | 2 | 3 | 3 | 1 | - | 5 | 8 | |
| rno-let-7e* | ----------------------------------------------------------------------------CTATACGGCCTCCTAGCTTTCC------------------------------- | 22 | 26 | 10 | - | 5 | 3 | - | - | 4 | 5 | - |
| --------------------------------GAGGTAGGAGGTTGTATAGT----------------------------------------------------------------------------- | 20 | 13 | 12 | - | - | 5 | 1 | 5 | 1 | 2 | 4 | |
| --------------------------------GAGGTAGGAGGTTGTATAGTT---------------------------------------------------------------------------- | 21 | 14 | 5 | - | - | 3 | 4 | - | 1 | 9 | 6 | |
| ----------------------------------------------------------------------------CTATACGGCCTCCTAGCTTTC-------------------------------- | 21 | 11 | 8 | 1 | - | 2 | - | 1 | - | 4 | - | |
| --------------------------------GAGGTAGGAGGTTGTATA------------------------------------------------------------------------------- | 18 | 5 | 8 | 1 | 3 | 1 | - | 1 | 3 | 1 | 2 | |
| -----------------------------------------------------GAGGAAGACACCCGAGGAGATCAC---------------------------------------------------- | 24 | 6 | - | - | - | 3 | - | - | - | - | - | |
| --------------------------------GAGGTAGGAGGTTGTATAGTTG--------------------------------------------------------------------------- | 22 | 1 | - | 2 | - | - | - | - | 2 | 2 | - | |
| --------------------------------GAGGTAGGAGGTTGTATAGTTGA-------------------------------------------------------------------------- | 23 | 4 | - | - | - | - | - | - | - | - | 3 | |
| ----------------------------------------------------------------------------CTATACGGCCTCCTAGCTTTCCCC----------------------------- | 24 | 3 | - | - | 2 | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------------------TATACGGCCTCCTAGCTTTCC------------------------------- | 21 | 3 | 2 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------CTATACGGCCTCCTAGCTTT--------------------------------- | 20 | - | 2 | - | - | - | 1 | - | - | 1 | 1 | |
| -----------------------------------------------------------------------------TATACGGCCTCCTAGCTTTC-------------------------------- | 20 | - | 1 | - | - | 1 | - | 1 | - | - | 1 | |
| -----------------------------------------------------GAGGAAGACACCCGAGGAGA-------------------------------------------------------- | 20 | - | 2 | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------------TATACGGCCTCCTAGCTTTCCC------------------------------ | 22 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------AGGTAGGAGGTTGTATAGTT---------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | - | - | 1 | |
| ------------------------------CTGAGGTAGGAGGTTGTATAGTT---------------------------------------------------------------------------- | 23 | - | 1 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------AGGTAGGAGGTTGTATAG------------------------------------------------------------------------------ | 18 | 2 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------GAGGAAGACACCCGAGGA---------------------------------------------------------- | 18 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------CTGAGGTAGGAGGTTGTA--------------------------------------------------------------------------------- | 18 | - | 1 | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------------------TATACGGCCTCCTAGCTT---------------------------------- | 18 | 2 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------AGGAAGACACCCGAGGAGA-------------------------------------------------------- | 19 | 1 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------GTAGGAGGTTGTATAGTT---------------------------------------------------------------------------- | 18 | 1 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------GAGGAAGACACCCGAGGAG--------------------------------------------------------- | 19 | 2 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------AGGAAGACACCCGAGGAGATCAC---------------------------------------------------- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------ACTATACGGCCTCCTAGCTTTC-------------------------------- | 22 | - | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------ACTATACGGCCTCCTAGC------------------------------------ | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------GAGGAAGACACCCGAGGAGATC------------------------------------------------------ | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------CTGAGGTAGGAGGTTGTAT-------------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------TAGGAGGTTGTATAGTTGAG------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | - | - | - | |
| -------------------------------------------------------------------------TCACTATACGGCCTCCTA-------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------GACACCCGAGGAGATCAC---------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------TCACTATACGGCCTCCTAG------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------------CACTATACGGCCTCCTAGC------------------------------------ | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------GGTAGGAGGTTGTATAGT----------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------------------ACTATACGGCCTCCTAGCTTTCC------------------------------- | 23 | - | - | - | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------------------ACTATACGGCCTCCTAGCTT---------------------------------- | 20 | - | - | - | - | - | - | - | - | - | 1 | |
| rat | -----------------CGCGCCCCCCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAAGACACCCGAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCGCC------------------- | |||||||||||
| human | CGGGTCTGTCCACCTGCCGCGCCCCCCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAGGACACCCAAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCGCCCTGCACGGGACGGGGCCCG | |||||||||||
| mouse | ----TCTGCCCACCTGCCGCGCCCCCCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAAGACACCCGAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGGCTGCGCCCTGCACTGGAAGGGGCCGG | |||||||||||
| ***************************************** ******* ******************************************* | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053576 ENSRNOG00000035453 rno-let-7e | |||||||||||
| rat | .((((..((.(((..(((.((((((((((((((((.((......(......)....)))))))))))))))))).)))..))).))..)))). | 1.000 -45.90 | ||||||||||
| human | (((((((((((...(((.((((..((.(((..(((.(((((((((((((((.(((...((....)).......)))))))))))))))))).)))..))).))..))))...)))..))))))).)))) | 0.997 -67.30 | ||||||||||
| mouse | ...((((.(((((.((((..((.(((..(((.(((((((((((((((.(((..................)))))))))))))))))).)))..))).))..))))...)))..))...))))... | 0.945 -56.67 | ||||||||||
| rat | chromosome:1:56487134:56487226:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053576|ENSRNOG00000035453 ## Same_strand|Boundary_non-coding|ENSRNOT00000053576|ENSRNOG00000035453 ## ENSRNOG00000035453|miRNA|rno-let-7e|rno-let-7e [Source:miRBase;Acc:MI0000832] ## {MIR: rno-let-7e} |
| human | chromosome:19:56887827:56887955:1 | Same_strand|Boundary_non-coding|ENST00000362102|ENSG00000198972|miRNA|hsa-let-7e [Source:miRBase;Acc:MI0000066] ## {MIR: hsa-let-7e} |
| mouse | chromosome:17:17967303:17967427:1 | Same_strand|Boundary_non-coding|ENSMUST00000083684|ENSMUSG00000065618|miRNA|mmu-let-7e [Source:miRBase;Acc:MI0000561] ## {MIR: mmu-let-7e} |
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