rno-let-7f-1-as
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-let-7f-1-as 3arm | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0.500 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-let-7f-1-as 3arm | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0.000 | 0 | 0 |
block604560 (Antisense miRBase rno-let-7f-1-as) [miRBaseNonMapped_lenNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseAS rno-let-7f-1-as | 0.001 | no | no | 0.33/0.38 | 18/21/0.50 | 0.0 | 1.5 | 2 | 0 | 2 | 0 | 10 | 10 | 3arm | 2 | nd | 0.22 | 3 | 2 | 2 | na | na |
| Located in cluster 30: rno-let-7a-1, rno-let-7f-1 |
| Member of family let-7b* (seed UAUACAA): rno-let-7a, rno-let-7f, rno-let-7c, rno-let-7b, rno-let-7f-1 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------UAUACAA----------------------- | 2 | let-7b* | |
| len | cloning frequencies | |||
| T2S2 | T4S2 | |||
| ----------------------------------------------------------------------CTATACAATCTACTACCTCAC---------- | 21 | 1 | - | |
| ----------------------------------------------------------------------CTATACAATCTACTACCT------------- | 18 | - | 1 | |
| rat | ACTCCTCAGGGAAGGCAATAGATTGTATAGTTATCTCCTAAACAGGGTAA----AATCACTACCCCACAACTATACAATCTACTACCTCACTCTGATAGAG | |||
| human | -------GGATGAGGTAGTAGGTTGTATAGTTTT---------AGGGTCACACCCACCACTGGGAGATAACTATACAATCTACTGTCTTTCC--------- | |||
| mouse | ----------GAAGGCAATAGATTGTATAGTTATCTCCTAAACAGGGTAA----AATCACTACCCCACAACTATACAATCTACTACCTCAC---------- | |||
| *** * *** ********** * ***** * * **** * **************** ** * | ||||
| .........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......... | ENSRNOT00000053661 ENSRNOG00000035538 rno-let-7f-1 | |||
| rat | .(((.((((((.(((...((((((((((((((............(((((. ......)))))...))))))))))))))...)))..))))))..))) | 0.900 -30.76 | ||
| human | (((.(((..((((((((((((((((.. ...(((...((((....)))).)))))))))))))))))))..)))))) | 0.201 -32.20 | ||
| mouse | ((.((...((((((((((((((............(((((. ......)))))...))))))))))))))...)))).. | 0.900 -22.06 | ||
| rat | chromosome:17:22120131:22120227:-1 | Opposite_strand|Exonic_non-coding|ENSRNOT00000053661|ENSRNOG00000035538 ## ENSRNOG00000035538|miRNA|rno-let-7f-1|rno-let-7f-1 [Source:miRBase;Acc:MI0000833] ## {ASMIR: rno-let-7f-1-as} |
| human | chromosome:9:95978030:95978166:1 | Same_strand|Boundary_non-coding|ENST00000362295|ENSG00000199165|miRNA|hsa-let-7a-1 [Source:miRBase;Acc:MI0000060] ## {MIR: hsa-let-7a-1} |
| mouse | chromosome:13:48633174:48633310:1 | Opposite_strand|Boundary_non-coding|ENSMUST00000083583|ENSMUSG00000065517|miRNA|mmu-let-7f-1 [Source:miRBase;Acc:MI0000562] ## {ASMIR: mmu-let-7f-1-as} |
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