rno-let-7i
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-let-7i 5arm | 9647 | 5047 | 1702 | 1870 | 5575 | 5254 | 2508 | 4111 | 2330 | 3501 |
| rno-let-7i 3arm | 309 | 275 | 23 | 30 | 245 | 167 | 86 | 140 | 97 | 81 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-let-7i 5arm | 0.321 | 0.220 | 0.092 | 0.111 | 0.272 | 0.398 | 0.195 | 0.216 | 0.154 | 0.233 |
| rno-let-7i 3arm | 0.010 | 0.012 | 0.001 | 0.002 | 0.012 | 0.013 | 0.007 | 0.007 | 0.006 | 0.005 |
sblock10826 (miRBase rno-let-7i) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-let-7i | 0.001 | no | no | 0.39/0.63 | 18/26/0.25 | 0.0 0.0 0.6 0.0 0.0 | 0.1 0.0 1.0 0.0 0.0 | 19917 8 7 1 596 | 0 0 0 0 0 | 10 5 4 1 10 | 0 0 0 0 0 | 5 27 27 23 2 | 11 -11 -23 -1 17 | 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.05 0.53 0.63 0.47 0.05 | 1 9 6 8 1 | 42998 | 10 | -1 | 2 |
| Member of family let-7a/7b/7c/7d/7e/7f/7i/miR-98 (seed GAGGUAG): rno-let-7a, rno-let-7f, rno-let-7e, rno-let-7a, rno-let-7f, rno-let-7d, rno-let-7c, rno-let-7b, rno-mir-98, rno-let-7c, rno-let-7i, block113823_cand, block2634835_cand |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------GAGGUAG----------------------------------------------------------------------------------------- | 41326 | let-7a/7b/7c/7d/7e/7f/7i/miR-98 | |||||||||
| seed | -------------------------------------------------------------------------------UGCGCAA--------------------------------- | 1429 | let-7i* | |||||||||
| seed | ------------------------AGGUAGU---------------------------------------------------------------------------------------- | 155 | miR-196a/196b/196c | |||||||||
| seed | ----------------------UGAGGUA------------------------------------------------------------------------------------------ | 47 | novel | |||||||||
| seed | --------------------------------------------------------------------------------GCGCAAG-------------------------------- | 14 | novel | |||||||||
| seed | ---------------------------------------------GUCGGGU------------------------------------------------------------------- | 8 | novel | |||||||||
| seed | ------------------------------------------------------UGACAUU---------------------------------------------------------- | 4 | novel | |||||||||
| seed | ---------------------------------------------------------------------------------CGCAAGC------------------------------- | 3 | novel | |||||||||
| seed | --------------------------GUAGUAG-------------------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | ---------------------------UAGUAGU------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | -------------------------------------------------------GACAUUG--------------------------------------------------------- | 2 | novel | |||||||||
| seed | -------------------------GGUAGUA--------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ----------------------------------------------------UGUGACA------------------------------------------------------------ | 1 | novel | |||||||||
| seed | ---------------------CUGAGGU------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -------------------------------------------------------------GCCCGCU--------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------TGAGGTAGTAGTTTGTGC------------------------------------------------------------------------------- | 18 | 5140 | 2835 | 1284 | 1301 | 3253 | 2795 | 1446 | 2351 | 1323 | 1813 | |
| ----------------------TGAGGTAGTAGTTTGTGCT------------------------------------------------------------------------------ | 19 | 1730 | 962 | 170 | 268 | 1148 | 1282 | 514 | 796 | 433 | 708 | |
| ----------------------TGAGGTAGTAGTTTGTGCTG----------------------------------------------------------------------------- | 20 | 1262 | 630 | 102 | 138 | 592 | 636 | 215 | 432 | 260 | 378 | |
| ----------------------TGAGGTAGTAGTTTGTGCTGT---------------------------------------------------------------------------- | 21 | 770 | 316 | 56 | 66 | 259 | 256 | 182 | 273 | 167 | 290 | |
| rno-let-7i | ----------------------TGAGGTAGTAGTTTGTGCTGTT--------------------------------------------------------------------------- | 22 | 633 | 257 | 79 | 82 | 272 | 232 | 129 | 224 | 119 | 269 |
| rno-let-7i* | ------------------------------------------------------------------------------CTGCGCAAGCTACTGCCTTGCT------------------- | 22 | 214 | 131 | 5 | 11 | 106 | 75 | 39 | 70 | 56 | 42 |
| ------------------------------------------------------------------------------CTGCGCAAGCTACTGCCT----------------------- | 18 | 36 | 56 | 7 | 4 | 47 | 41 | 14 | 25 | 9 | 18 | |
| ------------------------------------------------------------------------------CTGCGCAAGCTACTGCCTT---------------------- | 19 | 13 | 45 | 6 | 3 | 44 | 25 | 19 | 17 | 14 | 11 | |
| ----------------------TGAGGTAGTAGTTTGTGCTGTTG-------------------------------------------------------------------------- | 23 | 49 | 18 | 4 | 4 | 22 | 23 | 7 | 18 | 15 | 26 | |
| ------------------------------------------------------------------------------CTGCGCAAGCTACTGCCTTG--------------------- | 20 | 25 | 13 | - | 6 | 22 | 12 | 4 | 12 | 6 | 5 | |
| ------------------------------------------------------------------------------CTGCGCAAGCTACTGCCTTGC-------------------- | 21 | 17 | 26 | 2 | 3 | 20 | 9 | 4 | 9 | 11 | 4 | |
| -----------------------GAGGTAGTAGTTTGTGCTG----------------------------------------------------------------------------- | 19 | 14 | 6 | 2 | - | 11 | 10 | 1 | 4 | 1 | 4 | |
| -----------------------GAGGTAGTAGTTTGTGCT------------------------------------------------------------------------------ | 18 | 18 | 3 | 3 | 1 | 3 | 9 | 7 | 3 | - | 5 | |
| ---------------------CTGAGGTAGTAGTTTGTGC------------------------------------------------------------------------------- | 19 | 10 | 5 | 1 | 6 | 2 | 3 | 2 | 2 | 7 | 1 | |
| -----------------------GAGGTAGTAGTTTGTGCTGT---------------------------------------------------------------------------- | 20 | 7 | 5 | 1 | - | 2 | 3 | 2 | 3 | - | 2 | |
| -----------------------GAGGTAGTAGTTTGTGCTGTT--------------------------------------------------------------------------- | 21 | 5 | 4 | - | 2 | 3 | 1 | 1 | 2 | 3 | 3 | |
| ------------------------------------------------------------------------------CTGCGCAAGCTACTGCCTTGCTA------------------ | 23 | 2 | - | - | 1 | 4 | 3 | 2 | 1 | - | 1 | |
| --------------------------------------------GGTCGGGTTGTGACATTGC-------------------------------------------------------- | 19 | 1 | 1 | - | - | 3 | 1 | - | 2 | - | - | |
| ----------------------TGAGGTAGTAGTTTGTGCTGTTGG------------------------------------------------------------------------- | 24 | 3 | - | - | 1 | 1 | 1 | - | - | 1 | - | |
| -------------------------------------------------------------------------------TGCGCAAGCTACTGCCTT---------------------- | 18 | - | - | 3 | 2 | - | 1 | - | - | - | - | |
| ---------------------CTGAGGTAGTAGTTTGTG-------------------------------------------------------------------------------- | 18 | 1 | 1 | - | - | 1 | 1 | - | - | 1 | - | |
| -------------------------------------------------------------------------------TGCGCAAGCTACTGCCTTG--------------------- | 19 | - | - | - | - | 2 | - | - | 3 | - | - | |
| ----------------------TGAGGTAGTAGTTTGTGCTGTTGGT------------------------------------------------------------------------ | 25 | 2 | - | - | - | 1 | 1 | - | - | - | - | |
| -------------------------GGTAGTAGTTTGTGCTGTT--------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | 1 | 1 | - | - | |
| -----------------------------------------------------GTGACATTGCCCGCTGTGGAGA-------------------------------------------- | 22 | - | 1 | - | - | - | - | - | 2 | - | - | |
| ------------------------------------------------------TGACATTGCCCGCTGTGGA---------------------------------------------- | 19 | - | 2 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------------TGCGCAAGCTACTGCCTTGCT------------------- | 21 | - | 1 | - | - | - | - | 1 | - | - | - | |
| --------------------------------------------------------------------------------GCGCAAGCTACTGCCTTG--------------------- | 18 | - | - | - | - | - | - | 2 | - | - | - | |
| ---------------------CTGAGGTAGTAGTTTGTGCT------------------------------------------------------------------------------ | 20 | 1 | - | - | - | 1 | - | - | - | - | - | |
| --------------------------GTAGTAGTTTGTGCTGTT--------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | 1 | - | - | - | |
| ------------------------------------------------------------------------------CTGCGCAAGCTACTGCCTTGCTAG----------------- | 24 | 1 | - | - | - | - | - | 1 | - | - | - | |
| ---------------------CTGAGGTAGTAGTTTGTGCTG----------------------------------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------TTGTGACATTGCCCGCTGTGGAGA-------------------------------------------- | 24 | - | - | - | - | 1 | - | - | - | - | - | |
| -------------------------------------------------------------------------------TGCGCAAGCTACTGCCTTGC-------------------- | 20 | - | - | - | - | - | - | - | 1 | - | - | |
| --------------------GCTGAGGTAGTAGTTTGTG-------------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------------------GCGCAAGCTACTGCCTTGC-------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------GTGACATTGCCCGCTGTGG----------------------------------------------- | 19 | - | - | - | - | - | 1 | - | - | - | - | |
| ------------------------AGGTAGTAGTTTGTGCTGT---------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| ----------------------TGAGGTAGTAGTTTGTGCTGTTGGTC----------------------------------------------------------------------- | 26 | - | - | - | - | - | - | - | - | - | 1 | |
| -----------------------GAGGTAGTAGTTTGTGCTGTTG-------------------------------------------------------------------------- | 22 | - | 1 | - | - | - | - | - | - | - | - | |
| ------------------------AGGTAGTAGTTTGTGCTG----------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------TGCCCGCTGTGGAGATAAC---------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | -----------------CTGGCTGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTGACATTGCCCGCTGTGGAGATAACTGCGCAAGCTACTGCCTTGCTAG----------------- | |||||||||||
| human | ----------------------TGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTGACATTGCCCGCTGTGGAGATAACTGCGCAAGCTACTGCCTTG--------------------- | |||||||||||
| mouse | GCTCCCACACCATGGCCCTGGCTGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTGACATTGCCCGCTGTGGAGATAACTGCGCAAGCTACTGCCTTGCTAGTGCTGGTGATGCTCAGC | |||||||||||
| **************************************************************************** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053765 ENSRNOG00000035642 rno-let-7i | |||||||||||
| rat | (((((.(((((((((((((((((.(((((.(((((.........)))))))........))).)))))))))))))))))))))) | 1.000 -42.10 | ||||||||||
| human | .(((((((((((((((((.(((((.(((((.........)))))))........))).))))))))))))))))). | 0.811 -36.30 | ||||||||||
| mouse | (((..((((((..(((.(((((.(((((((((((((((((.(((((.(((((.........)))))))........))).)))))))))))))))))))))).))))))).))...))) | 0.810 -54.40 | ||||||||||
| rat | chromosome:7:62755360:62755444:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000053765|ENSRNOG00000035642 ## Same_strand|Exonic_non-coding|ENSRNOT00000053765|ENSRNOG00000035642 ## ENSRNOG00000035642|miRNA|rno-let-7i|rno-let-7i [Source:miRBase;Acc:MI0000835] ## {SimpF: oe = 0.90 0 CpG} ## {MIR: rno-let-7i} |
| human | chromosome:12:61283713:61283837:1 | Same_strand|Boundary_non-coding|ENST00000362309|ENSG00000199179|miRNA|hsa-let-7i [Source:miRBase;Acc:MI0000434] ## {SimpF: oe = 0.88 0 CpG,rank = 2 1 FirstEF} ## {MIR: hsa-let-7i} |
| mouse | chromosome:10:122422679:122422797:-1 | Same_strand|Boundary_non-coding|ENSMUST00000083472|ENSMUSG00000065406|miRNA|mmu-let-7i [Source:miRBase;Acc:MI0000138] ## {SimpF: oe = 0.96 1 CpG} ## {MIR: mmu-let-7i} |
©2008 InteRNA Genomics B.V.