miR-Intess: rno-mir-1-as

rno-mir-1-as

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-1-as 5arm	1	0	0	0	0	0	1	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-1-as 5arm	0.000	0	0	0	0	0	0.000	0	0	0

block724673 (Antisense miRBase rno-mir-1-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseAS rno-mir-1-as	0.003	no	no	0.26/0.30	19/23/0.50	1.0	3.0	2	0	2	0	22	4	5arm	1	nd	0.17	3	2	2	na	na

		reads	miRBase family seed
seed	-----------------------AUACACA---------------------------------------------------------------------------------	1	novel
seed	-------------------------ACACACU-------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T4S1
	----------------------AATACACACTTCTTTACAT----------------------------------------------------------------------	19	-	1
	------------------------TACACACTTCTTTACATTCCATA----------------------------------------------------------------	23	1	-
rat	ttggcggacattacctacccaaAATACACACTTCTTTACATTCCATAgcattctatgttcatatgggtacataaagaagtatgtgctctgagtaggcactattgtgccgat
	***************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000018025 ENSRNOG00000013281 NP_001100875.1
	................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..................	ENSRNOT00000053646 ENSRNOG00000035523 rno-mir-1
rat	(((((..(((.(((((((.((...((((.(((((((((...((((((((((...))))...))))))....))))))))).))))...)).)))))...)).)))))))).	0.930 -31.80

rat

chromosome:18:2191660:2191770:1

Opposite_strand|Exonic_non-coding|ENSRNOT00000053646|ENSRNOG00000035523 ## Same_strand|Intronic_coding|ENSRNOT00000018025|ENSRNOG00000013281 ## ENSRNOG00000035523|miRNA|rno-mir-1|rno-mir-1 [Source:miRBase;Acc:MI0003489] ## ENSRNOG00000013281|protein_coding|NP_001100875.1|mindbomb homolog 1 [Source:RefSeq_peptide;Acc:NP_001100875] ## {ASMIR: rno-mir-1-as}

miR-Intess™

rno-mir-1-as

block724673 (Antisense miRBase rno-mir-1-as) [miRBaseNonMapped_lenNOK_randfoldOK]