rno-mir-1
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-1 5arm | 0 | 0 | 0 | 0 | 0 | 1 | 66.500 | 113.500 | 0 | 0 |
| rno-mir-1 3arm | 40 | 4 | 78.500 | 58 | 5.500 | 6.500 | 19591.500 | 42809 | 2 | 10.500 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-1 5arm | 0 | 0 | 0 | 0 | 0 | 0.000 | 0.005 | 0.006 | 0 | 0 |
| rno-mir-1 3arm | 0.001 | 0.000 | 0.004 | 0.003 | 0.000 | 0.000 | 1.524 | 2.253 | 0.000 | 0.001 |
sblock5423 (miRBase rno-mir-1) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-1 | 0.001 | no | no | 0.25/0.41 | 18/25/0.71 | 0.0 0.0 0.0 | 0.9 0.0 1.5 | 141 2 53846 | 0 0 0 | 3 1 10 | 0 0 0 | 14 36 12 | 0 -24 2 | 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.09 0.60 0.05 | 2 14 1 | 64459 | 10 | 2 | 2 |
| Member of family miR-1/206 (seed GGAAUGU): rno-mir-206, rno-mir-1, block660545_cand, block1663618_cand |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------------------------------------------------------GGAAUGU--------------------------------------------- | 62433 | miR-1/206 | |||||||||
| seed | ---------------------------------------------------------------------------GAAUGUA-------------------------------------------- | 1681 | novel | |||||||||
| seed | -----------------------------------CAUACUU------------------------------------------------------------------------------------ | 178 | novel | |||||||||
| seed | -------------------------------------------------------------------------UGGAAUG---------------------------------------------- | 77 | novel | |||||||||
| seed | ----------------------------------------------------------------------------AAUGUAA------------------------------------------- | 68 | novel | |||||||||
| seed | ------------------------------------------------------------------------------UGUAAAG----------------------------------------- | 10 | novel | |||||||||
| seed | -----------------------------------------------------------------------------AUGUAAA------------------------------------------ | 6 | novel | |||||||||
| seed | ---------------------------------------------------------UGAACAU-------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------AUACUUC----------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | -----------------------------------------------------------------------UAUGGAA------------------------------------------------ | 1 | novel | |||||||||
| seed | ----------------------------------------------------------------------CUAUGGA------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------------CACAUAC-------------------------------------------------------------------------------------- | 0 | miR-1* | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------------------------TGGAATGTAAAGAAGTGTGT--------------------------------- | 20 | 15 | - | 22 | 14 | 1 | - | 6826 | 13498 | - | - | |
| rno-miR-1 | -------------------------------------------------------------------------TGGAATGTAAAGAAGTGTGTAT------------------------------- | 22 | 7 | 1 | 20 | 11 | 1 | 3 | 5174 | 14097 | 1 | 4 |
| -------------------------------------------------------------------------TGGAATGTAAAGAAGTGTG---------------------------------- | 19 | 10 | 2 | 23 | 22 | 2 | 2 | 4477 | 9774 | 1 | 6 | |
| -------------------------------------------------------------------------TGGAATGTAAAGAAGTGT----------------------------------- | 18 | 4 | - | 3 | 2 | 1 | 1 | 1013 | 2318 | - | 1 | |
| -------------------------------------------------------------------------TGGAATGTAAAGAAGTGTGTA-------------------------------- | 21 | 2 | - | 3 | 4 | 1 | 1 | 1161 | 1569 | - | - | |
| -------------------------------------------------------------------------TGGAATGTAAAGAAGTGTGTATT------------------------------ | 23 | 3 | 1 | 4 | 5 | - | - | 800 | 1515 | - | - | |
| --------------------------------------------------------------------------GGAATGTAAAGAAGTGTGT--------------------------------- | 19 | 1 | - | 4 | 1 | - | - | 293 | 475 | - | - | |
| --------------------------------------------------------------------------GGAATGTAAAGAAGTGTGTAT------------------------------- | 21 | - | - | 1 | - | - | - | 131 | 361 | - | - | |
| --------------------------------------------------------------------------GGAATGTAAAGAAGTGTG---------------------------------- | 18 | - | - | - | - | - | - | 87 | 130 | - | - | |
| --------------------------------------------------------------------------GGAATGTAAAGAAGTGTGTATT------------------------------ | 22 | - | - | - | - | - | - | 32 | 80 | - | - | |
| --------------------------------------------------------------------------GGAATGTAAAGAAGTGTGTA-------------------------------- | 20 | - | - | - | - | - | - | 34 | 51 | - | - | |
| ----------------------------------ACATACTTCTTTATGTACCCAT---------------------------------------------------------------------- | 22 | - | - | - | - | - | - | 20 | 37 | - | - | |
| ---------------------------------------------------------------------------GAATGTAAAGAAGTGTGTA-------------------------------- | 19 | - | - | - | - | - | - | 33 | 19 | - | - | |
| ----------------------------------ACATACTTCTTTATGTACCCATA--------------------------------------------------------------------- | 23 | - | - | - | - | - | 1 | 17 | 26 | - | - | |
| ----------------------------------ACATACTTCTTTATGTACCC------------------------------------------------------------------------ | 20 | - | - | - | - | - | - | 14 | 27 | - | - | |
| ------------------------------------------------------------------------ATGGAATGTAAAGAAGTGTGT--------------------------------- | 21 | - | - | - | - | - | - | 5 | 25 | - | - | |
| ----------------------------------ACATACTTCTTTATGTACC------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 9 | 11 | - | - | |
| ------------------------------------------------------------------------ATGGAATGTAAAGAAGTGTG---------------------------------- | 20 | - | - | - | - | - | - | 5 | 13 | - | - | |
| ----------------------------------ACATACTTCTTTATGTACCCA----------------------------------------------------------------------- | 21 | - | - | - | - | - | - | 4 | 10 | - | - | |
| ------------------------------------------------------------------------ATGGAATGTAAAGAAGTGTGTAT------------------------------- | 23 | - | - | - | - | - | - | 4 | 8 | - | - | |
| ------------------------------------------------------------------------ATGGAATGTAAAGAAGTG------------------------------------ | 18 | - | - | - | - | - | - | 3 | 8 | - | - | |
| -----------------------------------------------------------------------------ATGTAAAGAAGTGTGTAT------------------------------- | 18 | - | - | - | - | - | - | 7 | 3 | - | - | |
| ---------------------------------------------------------------------------GAATGTAAAGAAGTGTGTAT------------------------------- | 20 | - | - | - | - | - | - | 5 | 3 | - | - | |
| -------------------------------------------------------------------------TGGAATGTAAAGAAGTGTGTATTT----------------------------- | 24 | - | - | - | - | - | - | 1 | 6 | - | - | |
| ---------------------------------------------------------------------------GAATGTAAAGAAGTGTGT--------------------------------- | 18 | - | - | - | - | - | - | 2 | 5 | - | - | |
| ------------------------------------------------------------------------ATGGAATGTAAAGAAGTGT----------------------------------- | 19 | - | - | - | - | - | - | 2 | 2 | - | - | |
| ----------------------------------------------------------------------------AATGTAAAGAAGTGTGTAT------------------------------- | 19 | - | - | - | - | - | - | 2 | 2 | - | - | |
| --------------------------------------------------------ATGAACATAGAATGCTATGGAATGT--------------------------------------------- | 25 | - | - | - | - | - | - | 2 | - | - | - | |
| ----------------------------------ACATACTTCTTTATGTAC-------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | 1 | - | - | |
| ------------------------------------------------------------------------ATGGAATGTAAAGAAGTGTGTA-------------------------------- | 22 | - | - | - | - | - | - | - | 2 | - | - | |
| -----------------------------------CATACTTCTTTATGTACCC------------------------------------------------------------------------ | 19 | - | - | - | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------------------GAATGTAAAGAAGTGTGTATT------------------------------ | 21 | - | - | - | - | - | - | - | 1 | - | - | |
| -----------------------------------CATACTTCTTTATGTACCCATAT-------------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------------GCTATGGAATGTAAAGAAGT------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | - | - | |
| ----------------------------------------------------------------------------AATGTAAAGAAGTGTGTATT------------------------------ | 20 | - | - | - | - | - | - | - | 1 | - | - | |
| ----------------------------------------------------------------------------AATGTAAAGAAGTGTGTA-------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | - | |
| ----------------------------------------------------------------------CTATGGAATGTAAAGAAG-------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | - | |
| rno-miR-1* | --------------------------------GCACATACTTCTTTATGTACCC------------------------------------------------------------------------ | 22 | - | - | - | - | - | - | - | - | - | - |
| rat | --------------------TGCCTACTCAGAGCACATACTTCTTTATGTACCCATATGAACATAGAATGCTATGGAATGTAAAGAAGTGTGTATTTTGGGTAGGTA------------------- | |||||||||||
| human | ----------------------CCTACTCAGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTGGTAGG--------------------- | |||||||||||
| mouse | GCTATCGGCCGGCGCAGGAGTGCCTACTCAGAGCACATACTTCTTTATGTACCCATATGAACATTCAGTGCTATGGAATGTAAAGAAGTATGTATTTTGGGTAGGTAATGTCCGCCAAGAAGAAGC | |||||||||||
| *********** ****************************** * ********************* ******** ****** | ||||||||||||
| ----- --------------------------------------------------------------------------------------- ----- | ENSRNOT00000018025 ENSRNOG00000013281 NP_001100875.1 | |||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053646 ENSRNOG00000035523 rno-mir-1 | |||||||||||
| rat | (((((((((((((.((((((((((((((((..(((((..............))))).)))))))))))))))).))))))))))))) | 1.000 -38.64 | ||||||||||
| human | ((((((.(((((((((((((((((((((..(((((..............))))).))))))))))))))))))))).)))))) | 1.000 -34.74 | ||||||||||
| mouse | ......((.(((.(((....(((((((((((((.((((((((((((((((..(((((...((.....))..))))).)))))))))))))))).))))))))))))).)))))))).......... | 0.948 -51.60 | ||||||||||
| rat | chromosome:18:2191671:2191757:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000018025|ENSRNOG00000013281 ## Same_strand|Exonic_non-coding|ENSRNOT00000053646|ENSRNOG00000035523 ## ENSRNOG00000035523|miRNA|rno-mir-1|rno-mir-1 [Source:miRBase;Acc:MI0003489] ## ENSRNOG00000013281|protein_coding|NP_001100875.1|mindbomb homolog 1 [Source:RefSeq_peptide;Acc:NP_001100875] ## {MIR: rno-mir-1} |
| human | chromosome:18:17662964:17663046:-1 | Opposite_strand|Intronic_coding|ENST00000261537|ENSG00000101752|protein_coding|E3 ubiquitin-protein ligase MIB1 (EC 6.3.2.-)(Mind bomb homolog 1)(DAPK-interacting protein 1)(DIP-1)(Zinc finger ZZ type with ankyrin repeat domain protein 2) [Source:UniProtKB/Swiss-Prot;Acc:Q86YT6] ## Same_strand|Exonic_non-coding|ENST00000384961|ENSG00000207694|miRNA|hsa-mir-1-2 [Source:miRBase;Acc:MI0000437] ## {MIR: hsa-mir-1-2} |
| mouse | chromosome:18:10785452:10785577:-1 | Opposite_strand|Intronic_coding|ENSMUST00000052838|ENSMUSG00000024294|protein_coding|mindbomb homolog 1 (Drosophila) Gene [Source:MGI (curated);Acc:Mib1-001] ## Opposite_strand|Boundary_non-coding|ENSMUST00000117012|ENSMUSG00000080662|miRNA|mmu-mir-1-2-as [Source:miRBase;Acc:MI0006283] ## {MIR: mmu-mir-1-2} ## {ASMIR: mmu-mir-1-2-as} |
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