Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

rno-mir-10a-as

rno-mir-10a-as

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-10a-as 3arm	0	0	0	0	0	0	0	0	0	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-10a-as 3arm	0	0	0	0	0	0	0	0	0	0.000

rno-mir-10a-as relative cloning frequencies

block39129 (Antisense miRBase rno-mir-10a-as) [miRBaseNonMapped_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseAS rno-mir-10a-as	0.009	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	28	0	3arm	1	nd	0.18	2	1	1	na	na

Families
Member of family miR-10a (seed AAAUUCG): rno-mir-10a, rno-mir-10a

block39129 hairpin

		reads	miRBase family seed
seed	------------------------------------------------------------------------------ACAAAUU-----------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	-----------------------------------------------------------------------------CACAAATTCGGATCTACAGGGT---------------------------------------------	22	1
rat	------------GAGCGGAGTGTTTATGTCAACTACATATTCCCCTAGATACGAATTTGTGACCACAAAATTCCTTACACAAATTCGGATCTACAGGGTATATACAGAAGACAGACAGGTCTTCTTG-----------------
human	CTGGAAAAATAAGAGCGGAGTGTTTATGTCAACTACATATTCCCCTAGATACGAATTTGTGACCACAAAATTCCTTACACAAATTCGGATCTACAGGGTATATACAGAAGACAGACAGATCTTCTTGGCCCAGAAATTTTCCAG
mouse	------------------------------------ATATTCCCCTAGATACGAATTTGTGACCACAAAATTCCTTACACAAATTCGGATCTACAGGGTATAT-----------------------------------------
	*******************************************************************
	....< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...... .....	ENSRNOT00000053658 ENSRNOG00000035535 rno-mir-10a
rat	(((.(((.((((..((((..((..((((.(((.(((((.((((((((((................)))))))))).)))))..))).))))..))..))))))))..))).))).	0.890 -31.49
human	((((((((......((.(((.((((.((((..((..((((.(((.(((((.((((((((((................)))))))))).)))))..))).))))..))..))))...))))...))).)).......))))))))	0.852 -40.41
mouse	((((.(((.(((((.((((((((((................)))))))))).)))))..))).))))	1.000 -20.39

rat	chromosome:10:85049308:85049422:-1	Opposite_strand\|Exonic_non-coding\|ENSRNOT00000053658\|ENSRNOG00000035535 ## ENSRNOG00000035535\|miRNA\|rno-mir-10a\|rno-mir-10a [Source:miRBase;Acc:MI0000841] ## {ASMIR: rno-mir-10a-as}
human	chromosome:17:44012188:44012331:1	Opposite_strand\|Boundary_non-coding\|ENST00000385043\|ENSG00000207777\|miRNA\|hsa-mir-10a [Source:miRBase;Acc:MI0000266] ## {ASMIR: hsa-mir-10a-as}
mouse	chromosome:11:96178497:96178563:-1	Opposite_strand\|Exonic_non-coding\|ENSMUST00000083585\|ENSMUSG00000065519\|miRNA\|mmu-mir-10a [Source:miRBase;Acc:MI0000685] ## {ASMIR: mmu-mir-10a-as}

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