rno-mir-10b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-10b 5arm | 119 | 91 | 199 | 88 | 2156 | 1010 | 151 | 160 | 14838 | 17824 |
| rno-mir-10b 3arm | 3 | 0 | 1 | 1 | 9 | 12 | 0 | 2 | 214 | 217 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-10b 5arm | 0.004 | 0.004 | 0.011 | 0.005 | 0.105 | 0.077 | 0.012 | 0.008 | 0.978 | 1.186 |
| rno-mir-10b 3arm | 0.000 | 0 | 0.000 | 0.000 | 0.000 | 0.001 | 0 | 0.000 | 0.014 | 0.014 |
sblock7901 (miRBase rno-mir-10b) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-10b | 0.001 | no | no | 0.36/0.50 | 18/26/0.61 | 0.0 0.0 1.3 | 1.3 0.0 0.5 | 23593 1 317 | 0 0 0 | 10 1 8 | 0 0 0 | 23 46 22 | 5 -14 6 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.14 0.56 0.06 | 1 6 1 | 37095 | 10 | 0 | 0 |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------ACCCUGU---------------------------------------------------------------------------------------- | 29984 | miR-10a | |||||||||
| seed | -------------------------CCCUGUA--------------------------------------------------------------------------------------- | 6623 | novel | |||||||||
| seed | ---------------------------------------------------------------CAGAUUC------------------------------------------------- | 213 | novel | |||||||||
| seed | -----------------------------------------------------------------GAUUCGA----------------------------------------------- | 149 | novel | |||||||||
| seed | ----------------------------------------------------------------AGAUUCG------------------------------------------------ | 86 | novel | |||||||||
| seed | --------------------------CCUGUAG-------------------------------------------------------------------------------------- | 13 | miR-10b | |||||||||
| seed | ---------------------------CUGUAGA------------------------------------------------------------------------------------- | 7 | novel | |||||||||
| seed | -----------------------UACCCUG----------------------------------------------------------------------------------------- | 7 | novel | |||||||||
| seed | --------------------------------------------------------------ACAGAUU-------------------------------------------------- | 6 | novel | |||||||||
| seed | ------------------------------------------------------------------AUUCGAU---------------------------------------------- | 4 | novel | |||||||||
| seed | -----------------------------------------------GGUACCC----------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -------------------------------------------------------------CACAGAU--------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------UGUAGAA------------------------------------------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------TACCCTGTAGAACCGAATTTG--------------------------------------------------------------------------- | 21 | 34 | 32 | 45 | 31 | 793 | 373 | 42 | 55 | 5366 | 4355 | |
| -----------------------TACCCTGTAGAACCGAAT------------------------------------------------------------------------------ | 18 | 17 | 13 | 46 | 19 | 453 | 216 | 38 | 26 | 2557 | 3830 | |
| -----------------------TACCCTGTAGAACCGAATTTGT-------------------------------------------------------------------------- | 22 | 15 | 11 | 28 | 11 | 133 | 108 | 13 | 20 | 1106 | 3317 | |
| -----------------------TACCCTGTAGAACCGAATT----------------------------------------------------------------------------- | 19 | 24 | 13 | 36 | 17 | 328 | 123 | 22 | 25 | 1924 | 2244 | |
| ------------------------ACCCTGTAGAACCGAATTTG--------------------------------------------------------------------------- | 20 | 7 | 6 | 17 | 3 | 158 | 58 | 15 | 15 | 1274 | 1041 | |
| ------------------------ACCCTGTAGAACCGAATT----------------------------------------------------------------------------- | 18 | 3 | 3 | 5 | 1 | 102 | 41 | 12 | 4 | 678 | 767 | |
| -----------------------TACCCTGTAGAACCGAATTT---------------------------------------------------------------------------- | 20 | 11 | 12 | 13 | 2 | 44 | 29 | - | 9 | 459 | 623 | |
| ------------------------ACCCTGTAGAACCGAATTTGTGT------------------------------------------------------------------------ | 23 | 1 | - | 3 | - | 33 | 19 | 1 | - | 362 | 416 | |
| -----------------------TACCCTGTAGAACCGAATTTGTG------------------------------------------------------------------------- | 23 | - | - | 1 | - | 24 | 9 | 1 | 1 | 286 | 278 | |
| ------------------------ACCCTGTAGAACCGAATTTGTG------------------------------------------------------------------------- | 22 | 2 | - | - | 1 | 26 | 8 | - | 3 | 255 | 229 | |
| ------------------------ACCCTGTAGAACCGAATTTGT-------------------------------------------------------------------------- | 21 | - | 1 | - | 1 | 17 | 11 | 2 | 2 | 165 | 300 | |
| ------------------------ACCCTGTAGAACCGAATTT---------------------------------------------------------------------------- | 19 | 3 | - | 5 | 2 | 23 | 12 | 2 | - | 231 | 217 | |
| -----------------------TACCCTGTAGAACCGAATTTGTGT------------------------------------------------------------------------ | 24 | 2 | - | - | - | 16 | 2 | - | - | 121 | 164 | |
| ----------------------------------------------------------------AGATTCGATTCTAGGGGAA------------------------------------ | 19 | 1 | - | - | - | 1 | 4 | - | - | 53 | 38 | |
| --------------------------------------------------------------ACAGATTCGATTCTAGGGGAA------------------------------------ | 21 | - | - | - | 1 | 3 | 3 | - | - | 41 | 45 | |
| ------------------------ACCCTGTAGAACCGAATTTGTGTG----------------------------------------------------------------------- | 24 | - | - | - | - | 3 | 1 | 1 | - | 27 | 28 | |
| --------------------------------------------------------------ACAGATTCGATTCTAGGGGA------------------------------------- | 20 | - | - | - | - | 1 | - | - | - | 26 | 29 | |
| ---------------------------------------------------------------CAGATTCGATTCTAGGGGAA------------------------------------ | 20 | - | - | - | - | - | 2 | - | - | 27 | 19 | |
| --------------------------------------------------------------ACAGATTCGATTCTAGGG--------------------------------------- | 18 | 1 | - | 1 | - | - | - | - | 1 | 21 | 18 | |
| ----------------------------------------------------------------AGATTCGATTCTAGGGGA------------------------------------- | 18 | 1 | - | - | - | 1 | 1 | - | - | 14 | 14 | |
| ---------------------------------------------------------------CAGATTCGATTCTAGGGGA------------------------------------- | 19 | - | - | - | - | - | 1 | - | 1 | 7 | 11 | |
| --------------------------------------------------------------ACAGATTCGATTCTAGGGG-------------------------------------- | 19 | - | - | - | - | - | 1 | - | - | 9 | 6 | |
| -----------------------TACCCTGTAGAACCGAATTTGTGTG----------------------------------------------------------------------- | 25 | - | - | - | - | 1 | - | - | - | 13 | 2 | |
| ----------------------------------------------------------------AGATTCGATTCTAGGGGAATA---------------------------------- | 21 | - | - | - | - | 1 | - | - | - | 3 | 7 | |
| -------------------------CCCTGTAGAACCGAATTTG--------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | 2 | - | 4 | 3 | |
| ---------------------------------------------------------------CAGATTCGATTCTAGGGG-------------------------------------- | 18 | - | - | - | - | - | - | - | - | 3 | 5 | |
| --------------------------CCTGTAGAACCGAATTTGT-------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 4 | 3 | |
| ----------------------------------------------------------------AGATTCGATTCTAGGGGAATAT--------------------------------- | 22 | - | - | - | - | - | - | - | - | 1 | 6 | |
| ---------------------------------------------------------------CAGATTCGATTCTAGGGGAATA---------------------------------- | 22 | - | - | - | - | 1 | - | - | - | 1 | 4 | |
| --------------------------------------------------------------ACAGATTCGATTCTAGGGGAAT----------------------------------- | 22 | - | - | - | - | 1 | - | - | - | 1 | 3 | |
| -------------------------------------------------------------CACAGATTCGATTCTAGGGGAA------------------------------------ | 22 | - | - | - | - | - | - | - | - | 1 | 2 | |
| -----------------------------------------------------------------GATTCGATTCTAGGGGAA------------------------------------ | 18 | - | - | - | - | - | - | - | - | - | 3 | |
| ---------------------------------------------------------------CAGATTCGATTCTAGGGGAATAT--------------------------------- | 23 | - | - | - | - | - | - | - | - | - | 3 | |
| ----------------------------------------------------------------AGATTCGATTCTAGGGGAAT----------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | 2 | |
| -------------------------CCCTGTAGAACCGAATTTGT-------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | 1 | |
| -------------------------------------------------------------CACAGATTCGATTCTAGGG--------------------------------------- | 19 | - | - | - | - | - | - | - | - | 2 | - | |
| ----------------------ATACCCTGTAGAACCGAAT------------------------------------------------------------------------------ | 19 | - | - | - | - | - | - | - | - | 2 | - | |
| -----------------------TACCCTGTAGAACCGAATTTGTGTGG---------------------------------------------------------------------- | 26 | - | - | - | - | - | - | - | - | 1 | 1 | |
| ----------------------ATACCCTGTAGAACCGAATTTGT-------------------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | - | - | 2 | |
| -------------------------------------------------------------CACAGATTCGATTCTAGG---------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------CTGTAGAACCGAATTTGT-------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------GATTCGATTCTAGGGGAAT----------------------------------- | 19 | - | - | - | - | - | - | - | - | - | 1 | |
| ----------------------ATACCCTGTAGAACCGAA------------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------CAGATTCGATTCTAGGGGAAT----------------------------------- | 21 | - | - | - | - | - | - | - | - | - | 1 | |
| ----------------------ATACCCTGTAGAACCGAATTTG--------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------------------TGGTACCCACATAGTCAC------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| ----------------------ATACCCTGTAGAACCGAATTTGTGT------------------------------------------------------------------------ | 25 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------ACAGATTCGATTCTAGGGGAATA---------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------CCCTGTAGAACCGAATTT---------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------TCACAGATTCGATTCTAGGGGAA------------------------------------ | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| rno-miR-10b | -------------------------CCCTGTAGAACCGAATTTGTGT------------------------------------------------------------------------ | 22 | - | - | - | - | - | - | - | - | - | - |
| rat | AAAGTTGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGGTACCCACATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGATGCAAAAACTT-------------- | |||||||||||
| human | -----------------------TACCCTGTAGAACCGAATTTGTGTGGTATCCGTATAGTCACAGATTCGATTCTAGGGGAA------------------------------------ | |||||||||||
| mouse | GAGGTTGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGGTACCCACATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGATGCAAAAACTTCATATATCTCCGAC | |||||||||||
| **************************** ** *************************** | ||||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000002145 ENSRNOG00000001578 NP_001099355.1 | |||||||||||
| ...>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>... | ENSRNOT00000053677 ENSRNOG00000035554 rno-mir-10b | |||||||||||
| rat | .(((((....(((((.((((((((.((((.(((((.((((((((((..((......))...)))))))))).))))))))).)))))))).)))))....))))) | 1.000 -39.40 | ||||||||||
| human | ...(((.(((((.((((((((((..(((....)))...)))))))))).))))).))).. | 1.000 -24.40 | ||||||||||
| mouse | ((((((....(((((.((((((((.((((.(((((.((((((((((..((......))...)))))))))).))))))))).)))))))).)))))....))))))............. | 0.992 -43.40 | ||||||||||
| rat | chromosome:3:57340855:57340959:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053677|ENSRNOG00000035554 ## Same_strand|Intronic_non-coding|ENSRNOT00000002145|ENSRNOG00000001578 ## ENSRNOG00000001578|protein_coding|NP_001099355.1|homeo box D4 [Source:RefSeq_peptide;Acc:NP_001099355] ## ENSRNOG00000035554|miRNA|rno-mir-10b|rno-mir-10b [Source:miRBase;Acc:MI0000842] ## {MIR: rno-mir-10b} |
| human | chromosome:2:176723260:176723404:1 | Opposite_strand|Intronic_non-coding|ENST00000405359|ENSG00000218175|protein_coding| ## Same_strand|Boundary_non-coding|ENST00000385011|ENSG00000207744|miRNA|hsa-mir-10b [Source:miRBase;Acc:MI0000267] ## {MIR: hsa-mir-10b} |
| mouse | chromosome:2:74564108:74564226:1 | Same_strand|Intronic_non-coding|ENSMUST00000111983|ENSMUSG00000079277|protein_coding|homeo box D3 Gene [Source:MGI (curated);Acc:Hoxd3-001] ## Same_strand|Boundary_non-coding|ENSMUST00000053932|ENSMUSG00000079277|protein_coding|homeo box D3 Gene [Source:MGI (curated);Acc:Hoxd3-001] ## {MIR: mmu-mir-10b} |
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