rno-mir-15b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-15b 5arm | 1566 | 1120 | 1615 | 3305 | 19316.500 | 11505 | 1865.333 | 3234.500 | 1626 | 1795 |
| rno-mir-15b 3arm | 138 | 82 | 121 | 220 | 1077 | 514 | 69 | 237 | 107 | 128 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-15b 5arm | 0.052 | 0.049 | 0.087 | 0.196 | 0.941 | 0.872 | 0.145 | 0.170 | 0.107 | 0.119 |
| rno-mir-15b 3arm | 0.005 | 0.004 | 0.007 | 0.013 | 0.052 | 0.039 | 0.005 | 0.012 | 0.007 | 0.009 |
sblock6500 (miRBase rno-mir-15b) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-15b | 0.002 | no | no | 0.32/0.50 | 18/25/0.68 | 0.2 0.0 0.0 0.0 | 0.0 1.1 0.0 0.9 | 11 25254 1 1149 | 0 0 0 0 | 6 10 1 10 | 0 0 0 0 | 0 19 41 19 | 26 4 -19 5 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.26 0.17 0.43 0.17 | 3 1 7 1 | 49646 | 10 | 2 | 2 |
| Located in cluster 44: rno-mir-15b, rno-mir-16 |
| Member of family miR-15b/16/195/322/497 (seed AGCAGCA): rno-mir-322, rno-mir-195, rno-mir-15b, rno-mir-497, rno-mir-16, block864194_cand, block931792_cand, block2069771_cand |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------------------AGCAGCA------------------------------------------------------------------------------------------ | 46447 | miR-15b/16/195/322/497 | |||||||||
| seed | --------------------------------------------------------------------------GAAUCAU---------------------------------------------------- | 2679 | novel | |||||||||
| seed | -------------------------------------GCAGCAC----------------------------------------------------------------------------------------- | 456 | novel | |||||||||
| seed | --------------------------------------CAGCACA---------------------------------------------------------------------------------------- | 14 | novel | |||||||||
| seed | ------------------GGAACCU------------------------------------------------------------------------------------------------------------ | 12 | novel | |||||||||
| seed | -------------------------------------------------------------------------CGAAUCA----------------------------------------------------- | 10 | novel | |||||||||
| seed | -----------------------------------UAGCAGC------------------------------------------------------------------------------------------- | 10 | novel | |||||||||
| seed | ---------------------------------------AGCACAU--------------------------------------------------------------------------------------- | 5 | novel | |||||||||
| seed | -----------------UGGAACC------------------------------------------------------------------------------------------------------------- | 4 | novel | |||||||||
| seed | -----------------------------------------CACAUCA------------------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | ------------------------------------------------------------------------GCGAAUC------------------------------------------------------ | 2 | novel | |||||||||
| seed | ---------------------------------------------------------------------------AAUCAUU--------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------------------------------------ACUACAG-------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------------------GCACAUC-------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------------------------------------------------------AUCAUUA-------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------TAGCAGCACATCATGGTTTAC----------------------------------------------------------------------------- | 21 | 698 | 538 | 544 | 1555 | 7844 | 3595 | 908 | 1463 | 649 | 597 | |
| rno-miR-15b | -----------------------------------TAGCAGCACATCATGGTTTACA---------------------------------------------------------------------------- | 22 | 286 | 206 | 293 | 636 | 4168 | 2986 | 339 | 517 | 397 | 470 |
| -----------------------------------TAGCAGCACATCATGGTT-------------------------------------------------------------------------------- | 18 | 250 | 179 | 255 | 523 | 3994 | 2667 | 273 | 481 | 259 | 388 | |
| -----------------------------------TAGCAGCACATCATGGTTT------------------------------------------------------------------------------- | 19 | 218 | 113 | 388 | 368 | 2104 | 1411 | 213 | 445 | 188 | 212 | |
| -----------------------------------TAGCAGCACATCATGGTTTA------------------------------------------------------------------------------ | 20 | 94 | 54 | 101 | 148 | 818 | 621 | 108 | 270 | 84 | 88 | |
| -------------------------------------------------------------------------CGAATCATTATTTGCTGCTCT--------------------------------------- | 21 | 42 | 22 | 50 | 75 | 398 | 246 | 40 | 110 | 39 | 39 | |
| -------------------------------------------------------------------------CGAATCATTATTTGCTGC------------------------------------------ | 18 | 46 | 20 | 23 | 45 | 262 | 116 | 12 | 46 | 21 | 33 | |
| -------------------------------------------------------------------------CGAATCATTATTTGCTGCTCTA-------------------------------------- | 22 | 30 | 22 | 23 | 66 | 243 | 76 | 2 | 46 | 34 | 25 | |
| -----------------------------------TAGCAGCACATCATGGTTTACAT--------------------------------------------------------------------------- | 23 | 7 | 9 | 15 | 40 | 170 | 115 | 13 | 17 | 17 | 16 | |
| -------------------------------------------------------------------------CGAATCATTATTTGCTGCTC---------------------------------------- | 20 | 13 | 11 | 11 | 21 | 103 | 34 | 2 | 19 | 5 | 22 | |
| ------------------------------------AGCAGCACATCATGGTTTAC----------------------------------------------------------------------------- | 20 | 4 | 13 | 9 | 23 | 90 | 46 | 6 | 18 | 15 | 11 | |
| -------------------------------------------------------------------------CGAATCATTATTTGCTGCT----------------------------------------- | 19 | 6 | 7 | 12 | 13 | 63 | 38 | 12 | 13 | 8 | 6 | |
| ------------------------------------AGCAGCACATCATGGTTTACA---------------------------------------------------------------------------- | 21 | 4 | 4 | 4 | 7 | 62 | 32 | 1 | 12 | 8 | 8 | |
| ------------------------------------AGCAGCACATCATGGTTTA------------------------------------------------------------------------------ | 19 | 2 | 2 | 4 | 2 | 17 | 5 | 2 | 5 | 4 | 1 | |
| ------------------------------------AGCAGCACATCATGGTTT------------------------------------------------------------------------------- | 18 | 2 | - | - | 1 | 10 | 6 | 1 | 3 | 2 | 1 | |
| -----------------------------------TAGCAGCACATCATGGTTTACATAC------------------------------------------------------------------------- | 25 | - | 1 | 1 | - | 12 | 5 | 1 | 2 | - | - | |
| -----------------TGGAACCTTAAAGTACTG-------------------------------------------------------------------------------------------------- | 18 | 1 | - | - | 1 | 5 | 4 | - | - | 1 | - | |
| -------------------------------------GCAGCACATCATGGTTTAC----------------------------------------------------------------------------- | 19 | - | - | - | - | 3 | 1 | - | - | 2 | - | |
| ------------------------------------AGCAGCACATCATGGTTTACAT--------------------------------------------------------------------------- | 22 | - | - | - | 1 | 2 | 1 | - | - | - | 2 | |
| ----------------------------------GTAGCAGCACATCATGGT--------------------------------------------------------------------------------- | 18 | - | - | - | - | 4 | 1 | - | - | - | - | |
| -------------------------------------GCAGCACATCATGGTTTACA---------------------------------------------------------------------------- | 20 | - | - | - | - | 3 | 1 | - | 1 | - | - | |
| --------------------------------------CAGCACATCATGGTTTAC----------------------------------------------------------------------------- | 18 | - | - | - | - | 2 | 2 | - | 1 | - | - | |
| -------------------------------------------------------------------------CGAATCATTATTTGCTGCTCTAGA------------------------------------ | 24 | 1 | - | - | - | 1 | 1 | - | 2 | - | - | |
| ----------------TTGGAACCTTAAAGTACTG-------------------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | 2 | 1 | - | - | - | - | |
| ----------------------------------GTAGCAGCACATCATGGTT-------------------------------------------------------------------------------- | 19 | - | - | - | - | 2 | 2 | - | - | - | - | |
| -------------------------------------GCAGCACATCATGGTTTA------------------------------------------------------------------------------ | 18 | - | - | - | - | 2 | 1 | - | - | - | - | |
| ------------------------------------------------------------------------GCGAATCATTATTTGCTGCT----------------------------------------- | 20 | - | - | - | - | 1 | - | 1 | - | - | 1 | |
| ------------------------------------AGCAGCACATCATGGTTTACATAC------------------------------------------------------------------------- | 24 | - | 1 | - | - | - | 1 | - | - | - | 1 | |
| ----------------------------------------GCACATCATGGTTTACATA-------------------------------------------------------------------------- | 19 | - | - | - | - | 3 | - | - | - | - | - | |
| ------------------------------------------------------------------------GCGAATCATTATTTGCTGCTC---------------------------------------- | 21 | - | - | - | - | 3 | - | - | - | - | - | |
| -------------------------------------------------------------------------CGAATCATTATTTGCTGCTCTAG------------------------------------- | 23 | - | - | 1 | - | 2 | - | - | - | - | - | |
| -----------------------------------TAGCAGCACATCATGGTTTACATA-------------------------------------------------------------------------- | 24 | - | - | - | - | 1 | 1 | - | - | - | - | |
| -----------------------------------------------------------------------TGCGAATCATTATTTGCT-------------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | 1 | |
| ------------------------------------------------------------------------GCGAATCATTATTTGCTGCTCT--------------------------------------- | 22 | - | - | 1 | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------AATCATTATTTGCTGCTCT--------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------AGCACATCATGGTTTACA---------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | - | - | |
| ------------------------------------------------------------------------GCGAATCATTATTTGCTGC------------------------------------------ | 19 | - | - | - | - | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------GCGAATCATTATTTGCTG------------------------------------------- | 18 | - | - | - | - | - | 1 | - | - | - | - | |
| --------------------------------------------------------------------------GAATCATTATTTGCTGCTCT--------------------------------------- | 20 | - | - | - | - | - | 1 | - | - | - | - | |
| ---------------------------------------------------------TACTACAGTCAAGATGCGAATCA----------------------------------------------------- | 23 | - | - | - | - | - | 1 | - | - | - | - | |
| ----------------------------------GTAGCAGCACATCATGGTTTAC----------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| rat | ----------------TTGGAACCTTAAAGTACTGTAGCAGCACATCATGGTTTACATACTACAGTCAAGATGCGAATCATTATTTGCTGCTCTAGAAATTTAAGGAAATTCAT------------------- | |||||||||||
| human | GATGAATCCTACATTTTTGAGGCCTTAAAGTACTGTAGCAGCACATCATGGTTTACATGCTACAGTCAAGATGCGAATCATTATTTGCTGCTCTAGAAATTTAAGGAAATTCATTCAAAACTATGTTTTCATC | |||||||||||
| mouse | --TGAGTCCTGT-CTTTTGGAACCTTAAAGTACTGTAGCAGCACATCATGGTTTACATACTACAGTCAAGATGCGAATCATTATTTGCTGCTCTAGAAATTTAAGGAAATTCATTCAAGATTATATGGTACCA | |||||||||||
| *** ************************************ ******************************************************* | ||||||||||||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000013931 ENSRNOG00000010274 Smc4l1 | |||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053606 ENSRNOG00000035483 rno-mir-15b | |||||||||||
| rat | .((((.(((((((...(((.(((((((.((.((((((..(((.((.......)))))..)))))).)).))))))).)))...)))))))...)))). | 1.000 -30.30 | ||||||||||
| human | ((((((....(((((((((((.(((((((...(((.(((((((.((.((((((..(((.((.......)))))..)))))).)).))))))).)))...))))))).......)))))))..)))).)))))) | 0.996 -39.70 | ||||||||||
| mouse | ((.((((.(( (((.((((.(((((((...(((.(((((((.((.((((((..(((.((.......)))))..)))))).)).))))))).)))...)))))))...))))...))))).....)).)))) | 0.938 -35.30 | ||||||||||
| rat | chromosome:2:158992234:158992331:1 | Same_strand|Intronic_coding|ENSRNOT00000013931|ENSRNOG00000010274 ## Same_strand|Exonic_non-coding|ENSRNOT00000053606|ENSRNOG00000035483 ## ENSRNOG00000035483|miRNA|rno-mir-15b|rno-mir-15b [Source:miRBase;Acc:MI0000843] ## ENSRNOG00000010274|protein_coding|Smc4l1|Smc4l1 protein. [Source:UniProtKB/TrEMBL;Acc:Q32PX5] ## {MIR: rno-mir-15b} |
| human | chromosome:3:161605054:161605186:1 | Same_strand|Intronic_coding|ENST00000357388|ENSG00000113810|protein_coding|Structural maintenance of chromosomes protein 4 (Chromosome-associated polypeptide C)(hCAP-C)(XCAP-C homolog) [Source:UniProtKB/Swiss-Prot;Acc:Q9NTJ3] ## Same_strand|Boundary_non-coding|ENST00000385045|ENSG00000207779|miRNA|hsa-mir-15b [Source:miRBase;Acc:MI0000438] ## {MIR: hsa-mir-15b} |
| mouse | chromosome:3:68813665:68813794:1 | Same_strand|Intronic_coding|ENSMUST00000107803|ENSMUSG00000034349|protein_coding|structural maintenance of chromosomes 4 Gene [Source:MGI (curated);Acc:Smc4-001] ## Same_strand|Boundary_non-coding|ENSMUST00000083646|ENSMUSG00000065580|miRNA|mmu-mir-15b [Source:miRBase;Acc:MI0000140] ## {MIR: mmu-mir-15b} |
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