rno-mir-16
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-16 5arm | 3654 | 1875 | 1301 | 1504 | 8154 | 4267 | 1690 | 2871 | 3768 | 3341 |
| rno-mir-16 3arm | 7 | 5 | 2 | 5 | 39 | 35 | 0 | 6 | 12 | 18 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-16 5arm | 0.121 | 0.082 | 0.070 | 0.089 | 0.397 | 0.323 | 0.131 | 0.151 | 0.248 | 0.222 |
| rno-mir-16 3arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.003 | 0 | 0.000 | 0.001 | 0.001 |
sblock6501 (miRBase rno-mir-16) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-16 | 0.001 | no | no | 0.30/0.50 | 18/23/0.16 | 0.0 0.0 0.1 | 0.2 0.0 0.5 | 17721 1 42 | 0 0 0 | 10 1 9 | 0 0 0 | 16 23 17 | 9 3 6 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.11 0.28 0.11 | 2 2 2 | 32554 | 10 | -2 | -1 |
| Located in cluster 44: rno-mir-15b, rno-mir-16 |
| Member of family miR-15b/16/195/322/497 (seed AGCAGCA): rno-mir-322, rno-mir-195, rno-mir-15b, rno-mir-497, rno-mir-16, block864194_cand, block931792_cand, block2069771_cand |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------AGCAGCA--------------------------------------------------------------------------------------- | 31947 | miR-15b/16/195/322/497 | |||||||||
| seed | ----------------------------GCAGCAC-------------------------------------------------------------------------------------- | 449 | novel | |||||||||
| seed | ---------------------------------------------------------------------CCAAUAU--------------------------------------------- | 95 | novel | |||||||||
| seed | ----------------------------------------------------------------------CAAUAUU-------------------------------------------- | 34 | novel | |||||||||
| seed | --------------------------UAGCAGC---------------------------------------------------------------------------------------- | 21 | novel | |||||||||
| seed | -----------------------------CAGCACG------------------------------------------------------------------------------------- | 4 | novel | |||||||||
| seed | ------------------------------AGCACGU------------------------------------------------------------------------------------ | 3 | novel | |||||||||
| seed | ----------------------------------CGUAAAU-------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------TAGCAGCACGTAAATATTG---------------------------------------------------------------------------- | 19 | 1969 | 938 | 715 | 763 | 4284 | 2176 | 927 | 1537 | 2184 | 1796 | |
| --------------------------TAGCAGCACGTAAATATT----------------------------------------------------------------------------- | 18 | 957 | 565 | 334 | 447 | 2432 | 1343 | 594 | 846 | 1046 | 862 | |
| --------------------------TAGCAGCACGTAAATATTGGC-------------------------------------------------------------------------- | 21 | 433 | 218 | 145 | 171 | 829 | 431 | 66 | 306 | 307 | 363 | |
| --------------------------TAGCAGCACGTAAATATTGG--------------------------------------------------------------------------- | 20 | 213 | 113 | 71 | 88 | 435 | 240 | 87 | 134 | 148 | 215 | |
| ---------------------------AGCAGCACGTAAATATTG---------------------------------------------------------------------------- | 18 | 22 | 9 | 9 | 10 | 55 | 25 | 11 | 14 | 24 | 31 | |
| ---------------------------AGCAGCACGTAAATATTGG--------------------------------------------------------------------------- | 19 | 19 | 16 | 6 | 13 | 47 | 23 | 4 | 13 | 13 | 18 | |
| --------------------------TAGCAGCACGTAAATATTGGCGT------------------------------------------------------------------------ | 23 | 15 | 7 | 4 | 5 | 36 | 10 | - | 13 | 27 | 22 | |
| rno-miR-16 | --------------------------TAGCAGCACGTAAATATTGGCG------------------------------------------------------------------------- | 22 | 12 | 3 | 12 | 2 | 10 | 10 | - | 3 | 6 | 22 |
| ---------------------------AGCAGCACGTAAATATTGGC-------------------------------------------------------------------------- | 20 | 5 | 6 | 3 | 3 | 18 | 6 | - | 3 | 8 | 8 | |
| --------------------------------------------------------------------ACCAATATTATTGTGCTGC---------------------------------- | 19 | - | 2 | 1 | - | 9 | 13 | - | 3 | 4 | 2 | |
| --------------------------------------------------------------------ACCAATATTATTGTGCTGCT--------------------------------- | 20 | 2 | 1 | - | 1 | 14 | 4 | - | 2 | 1 | 3 | |
| --------------------------------------------------------------------ACCAATATTATTGTGCTGCTTT------------------------------- | 22 | 1 | - | - | 1 | 3 | 3 | - | 1 | 3 | 3 | |
| ---------------------------------------------------------------------CCAATATTATTGTGCTGCT--------------------------------- | 19 | 2 | - | - | - | 2 | 6 | - | - | 2 | 3 | |
| ---------------------------------------------------------------------CCAATATTATTGTGCTGC---------------------------------- | 18 | - | - | - | 1 | 4 | 4 | - | - | 1 | 1 | |
| --------------------------------------------------------------------ACCAATATTATTGTGCTGCTT-------------------------------- | 21 | 2 | 1 | - | 1 | 1 | 1 | - | - | - | 4 | |
| -------------------------CTAGCAGCACGTAAATATT----------------------------------------------------------------------------- | 19 | 1 | - | 1 | 1 | 1 | 2 | - | - | 2 | 1 | |
| --------------------------------------------------------------------ACCAATATTATTGTGCTG----------------------------------- | 18 | - | - | - | - | 3 | 3 | - | - | 1 | - | |
| ---------------------------------------------------------------------CCAATATTATTGTGCTGCTT-------------------------------- | 20 | - | 1 | 1 | 1 | 1 | 1 | - | - | - | 1 | |
| -------------------------CTAGCAGCACGTAAATAT------------------------------------------------------------------------------ | 18 | 1 | - | - | - | 2 | - | - | 2 | 1 | - | |
| ---------------------------AGCAGCACGTAAATATTGGCGT------------------------------------------------------------------------ | 22 | - | - | - | - | 2 | - | - | - | - | 2 | |
| -------------------------CTAGCAGCACGTAAATATTG---------------------------------------------------------------------------- | 20 | 1 | - | 1 | 1 | 1 | - | - | - | - | - | |
| ---------------------------AGCAGCACGTAAATATTGGCG------------------------------------------------------------------------- | 21 | 2 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------GCAGCACGTAAATATTGGC-------------------------------------------------------------------------- | 19 | 1 | - | - | - | 1 | - | - | - | - | 1 | |
| -------------------------CTAGCAGCACGTAAATATTGGC-------------------------------------------------------------------------- | 22 | 1 | - | - | - | - | 1 | - | - | - | - | |
| -----------------------------CAGCACGTAAATATTGGC-------------------------------------------------------------------------- | 18 | 1 | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------GCAGCACGTAAATATTGGCG------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------ACCAATATTATTGTGCTGCTTTA------------------------------ | 23 | - | - | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------------CCAATATTATTGTGCTGCTTT------------------------------- | 21 | - | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------CCAATATTATTGTGCTGCTTTA------------------------------ | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| ---------------------------------ACGTAAATATTGGCGTAG---------------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | - | - | |
| -----------------------------CAGCACGTAAATATTGGCG------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | ----------CATACTTGTTCCGCTCTAGCAGCACGTAAATATTGGCGTAGTGAAATAAATATTAAACACCAATATTATTGTGCTGCTTTAGTGTGACAGGGATA---------------- | |||||||||||
| human | GATGAACTGACATACTTGTTCCACTCTAGCAGCACGTAAATATTGGCGTAGTGAAATATATATTAAACACCAATATTACTGTGCTGCTTTAGTGTGACAGGGATACAGCAACTATTTTATC | |||||||||||
| mouse | --------------------------TAGCAGCACGTAAATATTGGCGTAGTGAAATAAATATTAAACACCAATATTATTGTGCTGCTT-------------------------------- | |||||||||||
| ******************************** ******************* ********** | ||||||||||||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000013931 ENSRNOG00000010274 Smc4l1 | |||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053627 ENSRNOG00000035504 rno-mir-16 | |||||||||||
| rat | ....(((((..((((..(((((((((..((((((((.((..(((........))).)).))))))))..)))))))))..))))..))))).... | 1.000 -37.40 | ||||||||||
| human | (((((((((.....(((((..((((..((((((((((.((((((((.((..(((........))).)).)))))))))).))))))))..))))..)))))....))).......)))))) | 0.984 -39.61 | ||||||||||
| mouse | .(((((((((..((((((((.((..(((........))).)).))))))))..))))))))). | 1.000 -23.10 | ||||||||||
| rat | chromosome:2:158992383:158992477:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053627|ENSRNOG00000035504 ## Same_strand|Boundary_non-coding|ENSRNOT00000053627|ENSRNOG00000035504 ## Same_strand|Intronic_coding|ENSRNOT00000013931|ENSRNOG00000010274 ## ENSRNOG00000035504|miRNA|rno-mir-16|rno-mir-16 [Source:miRBase;Acc:MI0000844] ## ENSRNOG00000010274|protein_coding|Smc4l1|Smc4l1 protein. [Source:UniProtKB/TrEMBL;Acc:Q32PX5] ## {MIR: rno-mir-16} |
| human | chromosome:3:161605210:161605330:1 | Same_strand|Intronic_coding|ENST00000357388|ENSG00000113810|protein_coding|Structural maintenance of chromosomes protein 4 (Chromosome-associated polypeptide C)(hCAP-C)(XCAP-C homolog) [Source:UniProtKB/Swiss-Prot;Acc:Q9NTJ3] ## Same_strand|Boundary_non-coding|ENST00000362117|ENSG00000198987|miRNA|hsa-mir-16-2 [Source:miRBase;Acc:MI0000115] ## {MIR: hsa-mir-16-2} |
| mouse | chromosome:3:68813804:68813938:1 | Same_strand|Intronic_coding|ENSMUST00000107803|ENSMUSG00000034349|protein_coding|structural maintenance of chromosomes 4 Gene [Source:MGI (curated);Acc:Smc4-001] ## Same_strand|Boundary_non-coding|ENSMUST00000083672|ENSMUSG00000065606|miRNA|mmu-mir-16-2 [Source:miRBase;Acc:MI0000566] ## {MIR: mmu-mir-16-2} |
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