rno-mir-18a
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-18a 5arm | 279 | 194 | 310 | 265 | 2349 | 1736 | 199 | 207 | 339 | 221 |
| rno-mir-18a 3arm | 25 | 20 | 1 | 11 | 112 | 93 | 8 | 20 | 11 | 9 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-18a 5arm | 0.009 | 0.008 | 0.017 | 0.016 | 0.114 | 0.132 | 0.015 | 0.011 | 0.022 | 0.015 |
| rno-mir-18a 3arm | 0.001 | 0.001 | 0.000 | 0.001 | 0.005 | 0.007 | 0.001 | 0.001 | 0.001 | 0.001 |
sblock4667 (miRBase rno-mir-18a) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-18a | 0.008 | no | no | 0.39/0.58 | 18/24/0.74 | 0.0 0.0 0.0 | 0.6 0.0 1.1 | 3067 1 178 | 0 0 0 | 10 1 10 | 0 0 0 | 16 39 17 | 5 -13 9 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.22 0.44 0.27 | 2 4 2 | 6409 | 10 | 2 | 0 |
| Located in cluster 26: rno-mir-17, rno-mir-18a, rno-mir-19a, rno-mir-20a, rno-mir-19b, rno-mir-92a |
| Member of family miR-18a (seed AAGGUGC): hsa-mir-18b, rno-mir-18a |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------AAGGUGC------------------------------------------------------------------------------- | 5915 | miR-18a | |||||||||
| seed | ---------------------------------------------------------------CUGCCCU-------------------------------------- | 298 | novel | |||||||||
| seed | -----------------------AGGUGCA------------------------------------------------------------------------------ | 177 | novel | |||||||||
| seed | --------------------------------------------------------------ACUGCCC--------------------------------------- | 9 | novel | |||||||||
| seed | ------------------------GGUGCAU----------------------------------------------------------------------------- | 6 | novel | |||||||||
| seed | ----------------------------------------------------------------UGCCCUA------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------------------------GAAGUAG-------------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------------------------------------------------------------GCCCUAA------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------TAAGGTGCATCTAGTGCAGA------------------------------------------------------------------- | 20 | 131 | 76 | 133 | 144 | 1079 | 894 | 56 | 99 | 175 | 102 | |
| ---------------------TAAGGTGCATCTAGTGCAG-------------------------------------------------------------------- | 19 | 33 | 39 | 44 | 53 | 356 | 327 | 47 | 52 | 39 | 38 | |
| rno-miR-18a | ---------------------TAAGGTGCATCTAGTGCAGATAG---------------------------------------------------------------- | 23 | 53 | 23 | 67 | 12 | 411 | 126 | 66 | 20 | 65 | 20 |
| ---------------------TAAGGTGCATCTAGTGCA--------------------------------------------------------------------- | 18 | 18 | 18 | 23 | 22 | 149 | 165 | 15 | 22 | 17 | 20 | |
| ---------------------TAAGGTGCATCTAGTGCAGAT------------------------------------------------------------------ | 21 | 23 | 25 | 22 | 9 | 157 | 70 | 10 | 2 | 11 | 16 | |
| ---------------------TAAGGTGCATCTAGTGCAGATA----------------------------------------------------------------- | 22 | 10 | 7 | 8 | 18 | 124 | 98 | 3 | 8 | 22 | 23 | |
| --------------------------------------------------------------ACTGCCCTAAGTGCTCCTTCT------------------------- | 21 | 14 | 6 | 1 | 8 | 37 | 24 | 4 | 6 | 1 | 1 | |
| --------------------------------------------------------------ACTGCCCTAAGTGCTCCT---------------------------- | 18 | 4 | 9 | - | 3 | 22 | 23 | 1 | 5 | 2 | 8 | |
| --------------------------------------------------------------ACTGCCCTAAGTGCTCCTTCTG------------------------ | 22 | 1 | 1 | - | - | 14 | 26 | 3 | 8 | 7 | - | |
| ----------------------AAGGTGCATCTAGTGCAGATAG---------------------------------------------------------------- | 22 | 3 | 3 | 3 | - | 13 | 20 | - | - | 1 | - | |
| ----------------------AAGGTGCATCTAGTGCAG-------------------------------------------------------------------- | 18 | 3 | 1 | 2 | 2 | 15 | 11 | - | 3 | 3 | 1 | |
| ----------------------AAGGTGCATCTAGTGCAGA------------------------------------------------------------------- | 19 | 2 | 1 | 1 | 1 | 22 | 10 | - | 1 | - | - | |
| --------------------------------------------------------------ACTGCCCTAAGTGCTCCTTC-------------------------- | 20 | 5 | 2 | - | - | 18 | 11 | - | - | 1 | - | |
| ----------------------AAGGTGCATCTAGTGCAGAT------------------------------------------------------------------ | 20 | 2 | - | - | 1 | 12 | 7 | - | - | 5 | 1 | |
| ----------------------AAGGTGCATCTAGTGCAGATA----------------------------------------------------------------- | 21 | - | 1 | 3 | - | 5 | 5 | 1 | - | 1 | - | |
| --------------------------------------------------------------ACTGCCCTAAGTGCTCCTT--------------------------- | 19 | 1 | - | - | - | 11 | 3 | - | 1 | - | - | |
| ----------------------AAGGTGCATCTAGTGCAGATAGT--------------------------------------------------------------- | 23 | 1 | - | 4 | 2 | 2 | 2 | - | - | - | - | |
| --------------------------------------------------------------ACTGCCCTAAGTGCTCCTTCTGGC---------------------- | 24 | - | 1 | - | - | 2 | 1 | - | - | - | - | |
| -------------------------------------------------------------TACTGCCCTAAGTGCTCCTTCT------------------------- | 22 | - | - | - | - | 4 | - | - | - | - | - | |
| -------------------------------------------------------------TACTGCCCTAAGTGCTCCTTC-------------------------- | 21 | - | - | - | - | 2 | 2 | - | - | - | - | |
| -----------------------AGGTGCATCTAGTGCAGATAG---------------------------------------------------------------- | 21 | - | - | - | 1 | 1 | - | - | - | - | - | |
| --------------------------------------------------------------ACTGCCCTAAGTGCTCCTTCTGG----------------------- | 23 | - | - | - | - | 1 | 1 | - | - | - | - | |
| --------------------------------------------TGAAGTAGACTAGCATCT---------------------------------------------- | 18 | - | - | - | - | - | 1 | - | - | - | - | |
| ---------------------------------------------------------------CTGCCCTAAGTGCTCCTTCT------------------------- | 20 | - | - | - | - | - | 1 | - | - | - | - | |
| -----------------------AGGTGCATCTAGTGCAGA------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------------AGGTGCATCTAGTGCAGATAGT--------------------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------CTGCCCTAAGTGCTCCTTC-------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------AGGTGCATCTAGTGCAGATA----------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------------AGGTGCATCTAGTGCAGAT------------------------------------------------------------------ | 19 | - | - | - | - | 1 | - | - | - | - | - | |
| -------------------------------------------------------------TACTGCCCTAAGTGCTCCT---------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------TGCCCTAAGTGCTCCTTC-------------------------- | 18 | - | - | - | - | - | 1 | - | - | - | - | |
| rat | -----TGCGTGCTTTTTGTTCTAAGGTGCATCTAGTGCAGATAGTGAAGTAGACTAGCATCTACTGCCCTAAGTGCTCCTTCTGGCATAAGAAGTTATGTC------- | |||||||||||
| human | GATGTTGAGTGCTTTTTGTTCTAAGGTGCATCTAGTGCAGATAGTGAAGTAGATTAGCATCTACTGCCCTAAGTGCTCCTTCTGGCATAAGAAGTTATGTATTCATC- | |||||||||||
| mouse | ----------GCTTTTTGTTCTAAGGTGCATCTAGTGCAGATAGTGAAGTAGACTAGCATCTACTGCCCTAAGTGCTCCTTCTGGCATAAGAAGTTATGTCCTCATCC | |||||||||||
| ******************************************* ********************************************** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053768 ENSRNOG00000035645 rno-mir-18a | |||||||||||
| rat | .(((((((((((((.((((((.(((..(((.((((.(((((.((....))..)).))))))).)))..))).)))..))).)))))))).))))). | 1.000 -31.00 | ||||||||||
| human | ((((......(((((((((.((((((.(((..(((.((((.(((....((......))..))))))).)))..))).)))..))).)))))))))........)))) | 0.995 -29.94 | ||||||||||
| mouse | (((((((((.((((((.(((..(((.((((.(((((.((....))..)).))))))).)))..))).)))..))).)))))))))............. | 0.811 -28.30 | ||||||||||
| rat | chromosome:15:99853871:99853966:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053768|ENSRNOG00000035645 ## ENSRNOG00000035645|miRNA|rno-mir-18a|rno-mir-18a [Source:miRBase;Acc:MI0000846] ## {MIR: rno-mir-18a} |
| human | chromosome:13:90800990:90801096:1 | Same_strand|Exonic_non-coding|ENST00000400280|ENSG00000215417|protein_coding|Putative microRNA host gene 1 protein [Source:UniProtKB/Swiss-Prot;Acc:Q75NE6] ## Same_strand|Intronic_coding|ENST00000400282|ENSG00000215417|protein_coding|Putative microRNA host gene 1 protein [Source:UniProtKB/Swiss-Prot;Acc:Q75NE6] ## Same_strand|Boundary_non-coding|ENST00000362310|ENSG00000199180|miRNA|hsa-mir-18a [Source:miRBase;Acc:MI0000072] ## {MIR: hsa-mir-18a} |
| mouse | chromosome:14:115443078:115443175:1 | Same_strand|Boundary_non-coding|ENSMUST00000083469|ENSMUSG00000065403|miRNA|mmu-mir-18a [Source:miRBase;Acc:MI0000567] ## {MIR: mmu-mir-18a} |
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