miR-Intess: rno-mir-19a

rno-mir-19a

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-19a 5arm	1	0	4	1	6	3	1	0	4	2
rno-mir-19a 3arm	356.500	264	1375.500	1228	4438	5067	448.500	466	1168.500	1423
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-19a 5arm	0.000	0	0.000	0.000	0.000	0.000	0.000	0	0.000	0.000
rno-mir-19a 3arm	0.012	0.012	0.074	0.073	0.216	0.384	0.035	0.025	0.077	0.095

sblock4668 (miRBase rno-mir-19a) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-19a	0.001	no	no	0.30/0.44	18/25/0.88	0.4 0.0	1.4 0.3	22 6472	0 0	8 10	0 0	12 11	0 6	5arm 3arm	1 1	nd nd	0.00 0.13	0 2	17094	10	3	1

Clusters
Located in cluster 26: rno-mir-17, rno-mir-18a, rno-mir-19a, rno-mir-20a, rno-mir-19b, rno-mir-92a

Families
Member of family miR-19a/19b (seed GUGCAAA): rno-mir-19b, rno-mir-19a, rno-mir-19b

		reads	miRBase family seed
seed	-------------------------------------------------------------GUGCAAA------------------------------------------	16390	miR-19a/19b
seed	------------------------------------------------------------UGUGCAA-------------------------------------------	525	novel
seed	--------------------------------------------------------------UGCAAAU-----------------------------------------	157	novel
seed	--------------------------GUUUUGC-----------------------------------------------------------------------------	13	novel
seed	-------------------------CGUUUUG------------------------------------------------------------------------------	9	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	------------------------------------------------------------TGTGCAAATCTATGCAAAACTG----------------------------	22	119	107	480	523	1968	2353	187	220	405	543
rno-miR-19a	------------------------------------------------------------TGTGCAAATCTATGCAAAACTGA---------------------------	23	126	66	518	367	1018	1133	152	90	451	531
	------------------------------------------------------------TGTGCAAATCTATGCAAAAC------------------------------	20	45	40	146	122	559	587	43	49	108	159
	------------------------------------------------------------TGTGCAAATCTATGCAAA--------------------------------	18	35	38	139	158	542	488	43	52	75	104
	------------------------------------------------------------TGTGCAAATCTATGCAAAACT-----------------------------	21	29	21	61	68	344	458	26	41	102	62
	------------------------------------------------------------TGTGCAAATCTATGCAAAA-------------------------------	19	7	3	31	21	70	91	6	19	17	22
	-----------------------------------------------------------TTGTGCAAATCTATGCAAAACTG----------------------------	23	2	2	15	12	51	46	5	2	12	14
	-----------------------------------------------------------TTGTGCAAATCTATGCAAAACT-----------------------------	22	2	3	10	11	32	47	3	10	10	10
	-----------------------------------------------------------TTGTGCAAATCTATGCAA---------------------------------	18	-	2	10	3	30	24	-	1	6	7
	-------------------------------------------------------------GTGCAAATCTATGCAAAACTGA---------------------------	22	2	1	10	9	20	14	-	1	6	4
	-----------------------------------------------------------TTGTGCAAATCTATGCAAA--------------------------------	19	1	-	6	4	17	23	1	4	2	2
	-------------------------------------------------------------GTGCAAATCTATGCAAAACTG----------------------------	21	2	-	12	3	19	12	-	-	2	4
	-----------------------------------------------------------TTGTGCAAATCTATGCAAAAC------------------------------	21	1	-	4	2	22	17	1	1	2	4
	-----------------------------------------------------------TTGTGCAAATCTATGCAAAACTGA---------------------------	24	1	-	2	1	2	7	1	1	3	5
	-------------------------------------------------------------GTGCAAATCTATGCAAAAC------------------------------	19	2	-	1	2	4	9	-	-	2	-
	-------------------------------------------------------------GTGCAAATCTATGCAAAACT-----------------------------	20	-	-	-	1	7	2	2	-	1	2
	-----------------------------------------------------------TTGTGCAAATCTATGCAAAA-------------------------------	20	-	-	-	-	3	-	-	1	-	2
	-------------------------CGTTTTGCATAGTTGCACTAC----------------------------------------------------------------	21	-	-	1	-	3	-	-	-	-	-
	------------------------TCGTTTTGCATAGTTGCACT------------------------------------------------------------------	20	-	-	2	1	-	-	-	-	1	-
	-------------------------CGTTTTGCATAGTTGCACTA-----------------------------------------------------------------	20	-	-	-	-	-	-	1	-	2	1
	------------------------TCGTTTTGCATAGTTGCAC-------------------------------------------------------------------	19	-	-	-	-	1	1	-	-	-	-
	------------------------TCGTTTTGCATAGTTGCACTAC----------------------------------------------------------------	22	-	-	-	-	-	2	-	-	-	-
	-------------------------CGTTTTGCATAGTTGCAC-------------------------------------------------------------------	18	-	-	-	-	-	-	-	-	1	1
	-------------------------CGTTTTGCATAGTTGCACT------------------------------------------------------------------	19	-	-	1	-	1	-	-	-	-	-
	-------------------------------------------------------------GTGCAAATCTATGCAAAA-------------------------------	18	-	-	-	-	-	-	-	-	1	-
	-------------------------CGTTTTGCATAGTTGCACTACA---------------------------------------------------------------	22	-	-	-	-	1	-	-	-	-	-
	------------------------TCGTTTTGCATAGTTGCACTACA---------------------------------------------------------------	23	1	-	-	-	-	-	-	-	-	-
	------------------------------------------------------------TGTGCAAATCTATGCAAAACTGAT--------------------------	24	-	-	-	-	1	-	-	-	-	-
	------------------------------------------------------------TGTGCAAATCTATGCAAAACTGATG-------------------------	25	-	-	-	-	-	-	-	-	1	-
rat	------------GCAGCCCTCTGTTCGTTTTGCATAGTTGCACTACAAGAAGAATGTAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGC----------------
human	------------GCAGTCCTCTGTTAGTTTTGCATAGTTGCACTACAAGAAGAATGTAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGC----------------
mouse	ATAGTTGTGTTTGCAGCCCTCTGTTAGTTTTGCATAGTTGCACTACAAGAAGAATGTAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGCTATTTACTTCAAGTGT
	** **** ******************************************************************
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000053701 ENSRNOG00000035578 rno-mir-19a
rat	((((.((.(((((.(((((((((((((((((((((.......))))...))))))..))))))))))).))))).)).))))	1.000 -34.90
human	((((.((.(((((((((((((((((((((((((((.......))))))...))))..))))))))))))))))).)).))))	1.000 -39.10
mouse	(((.(((.((..((((.((.(((((((((((((((((((((((((((.......))))))...))))..))))))))))))))))).)).)))).....))..))).)))	0.980 -42.40

rat	chromosome:15:99854018:99854099:1	Same_strand\|Exonic_non-coding\|ENSRNOT00000053701\|ENSRNOG00000035578 ## ENSRNOG00000035578\|miRNA\|rno-mir-19a\|rno-mir-19a [Source:miRBase;Acc:MI0000849] ## {MIR: rno-mir-19a}
human	chromosome:13:90801146:90801227:1	Same_strand\|Exonic_non-coding\|ENST00000400280\|ENSG00000215417\|protein_coding\|Putative microRNA host gene 1 protein [Source:UniProtKB/Swiss-Prot;Acc:Q75NE6] ## Same_strand\|Intronic_coding\|ENST00000400282\|ENSG00000215417\|protein_coding\|Putative microRNA host gene 1 protein [Source:UniProtKB/Swiss-Prot;Acc:Q75NE6] ## {MIR: hsa-mir-19a}
mouse	chromosome:14:115443210:115443319:1	Same_strand\|Boundary_non-coding\|ENSMUST00000083482\|ENSMUSG00000065416\|miRNA\|mmu-mir-19a [Source:miRBase;Acc:MI0000688] ## {MIR: mmu-mir-19a}

miR-Intess™

rno-mir-19a

sblock4668 (miRBase rno-mir-19a) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]