rno-mir-19b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-19b 5arm | 19 | 8 | 78 | 45 | 129 | 72 | 16 | 14 | 37 | 29 |
| rno-mir-19b 3arm | 5670 | 4131 | 17147 | 15985 | 41113 | 42571 | 5333 | 7236 | 15082 | 20833 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-19b 5arm | 0.001 | 0.000 | 0.004 | 0.003 | 0.006 | 0.005 | 0.001 | 0.001 | 0.002 | 0.002 |
| rno-mir-19b 3arm | 0.188 | 0.180 | 0.929 | 0.948 | 2.002 | 3.226 | 0.415 | 0.381 | 0.994 | 1.386 |
sblock12716 (miRBase rno-mir-19b-2) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-19b-2 | 0.001 | no | no | 0.37/0.44 | 18/26/0.81 | 0.0 0.0 | 0.0 0.0 | 1 61085 | 0 0 | 1 10 | 0 0 | 18 13 | 6 9 | 5arm 3arm | 1 2 | nd nd | 0.12 0.09 | 3 2 | 127380 | 10 | 2 | 1 |
| Located in cluster 86: rno-mir-363, rno-mir-92a, rno-mir-19b, rno-mir-20b, hsa-mir-18b, rno-mir-17 |
| Member of family miR-19a/19b (seed GUGCAAA): rno-mir-19b, rno-mir-19a, rno-mir-19b |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------------------------------------------------------GUGCAAA--------------------------------------- | 126135 | miR-19a/19b | |||||||||
| seed | -----------------------------------------------------------------------UGCAAAU-------------------------------------- | 844 | novel | |||||||||
| seed | ---------------------------------------------------------------------UGUGCAA---------------------------------------- | 387 | novel | |||||||||
| seed | -------------------------------------------------------------------------CAAAUCC------------------------------------ | 6 | novel | |||||||||
| seed | ------------------------------------------------------------------------GCAAAUC------------------------------------- | 5 | novel | |||||||||
| seed | --------------------------------------------------------------------------AAAUCCA----------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------GUUUUGC---------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------------TGTGCAAATCCATGCAAAACTG------------------------- | 22 | 1872 | 1464 | 5829 | 5631 | 17095 | 18671 | 2146 | 2720 | 5626 | 8233 | |
| ---------------------------------------------------------------------TGTGCAAATCCATGCAAA----------------------------- | 18 | 682 | 550 | 2262 | 2016 | 5521 | 4843 | 622 | 1060 | 1488 | 2040 | |
| ---------------------------------------------------------------------TGTGCAAATCCATGCAAAAC--------------------------- | 20 | 567 | 402 | 1673 | 1744 | 4707 | 4284 | 470 | 764 | 1298 | 1728 | |
| ---------------------------------------------------------------------TGTGCAAATCCATGCAAAACT-------------------------- | 21 | 592 | 430 | 1028 | 1128 | 3202 | 3597 | 452 | 674 | 1032 | 1359 | |
| ---------------------------------------------------------------------TGTGCAAATCCATGCAAAA---------------------------- | 19 | 112 | 110 | 298 | 304 | 680 | 850 | 89 | 158 | 283 | 345 | |
| rno-miR-19b | ---------------------------------------------------------------------TGTGCAAATCCATGCAAAACTGA------------------------ | 23 | 36 | 18 | 200 | 172 | 278 | 251 | 45 | 53 | 110 | 223 |
| ----------------------------------------------------------------------GTGCAAATCCATGCAAAACTG------------------------- | 21 | 14 | 16 | 47 | 47 | 176 | 113 | 26 | 18 | 53 | 71 | |
| --------------------------------------------------------------------CTGTGCAAATCCATGCAAAACTG------------------------- | 23 | 1 | 1 | - | 10 | 73 | 50 | 1 | 4 | 24 | 12 | |
| ----------------------------------------------------------------------GTGCAAATCCATGCAAAAC--------------------------- | 19 | 3 | - | 9 | 17 | 31 | 29 | 5 | 9 | 15 | 6 | |
| ----------------------------------------------------------------------GTGCAAATCCATGCAAAACT-------------------------- | 20 | 5 | 5 | 3 | 12 | 33 | 27 | 5 | 9 | 2 | 14 | |
| --------------------------------------------------------------------CTGTGCAAATCCATGCAA------------------------------ | 18 | - | 1 | 3 | 2 | 33 | 19 | 1 | - | 7 | 1 | |
| --------------------------------------------------------------------CTGTGCAAATCCATGCAAAAC--------------------------- | 21 | - | - | 1 | 1 | 19 | 22 | - | 1 | 8 | 2 | |
| --------------------------------------------------------------------CTGTGCAAATCCATGCAAAACT-------------------------- | 22 | 5 | 1 | 2 | 1 | 13 | 9 | 1 | 4 | 7 | 4 | |
| --------------------------------------------------------------------CTGTGCAAATCCATGCAAA----------------------------- | 19 | - | - | 1 | - | 14 | 14 | 1 | 1 | 3 | 3 | |
| ---------------------------------------------------------------------TGTGCAAATCCATGCAAAACTGAT----------------------- | 24 | - | - | 2 | 2 | 2 | 2 | - | - | 1 | 8 | |
| ----------------------------------------------------------------------GTGCAAATCCATGCAAAA---------------------------- | 18 | 1 | - | - | 2 | 7 | 3 | - | - | - | - | |
| ----------------------------------------------------------------------GTGCAAATCCATGCAAAACTGAT----------------------- | 23 | - | - | - | 3 | 1 | 1 | - | - | - | 1 | |
| ----------------------------------------------------------------------GTGCAAATCCATGCAAAACTGA------------------------ | 22 | - | - | 2 | 1 | 1 | 1 | - | - | - | - | |
| -----------------------------------------------------------------------TGCAAATCCATGCAAAACTG------------------------- | 20 | - | - | - | 2 | 2 | 1 | - | - | - | - | |
| ------------------------------------------------------------------------GCAAATCCATGCAAAACTG------------------------- | 19 | - | - | - | - | - | 3 | - | - | 2 | - | |
| --------------------------------------------------------------------CTGTGCAAATCCATGCAAAA---------------------------- | 20 | - | - | - | - | 1 | 2 | - | - | - | - | |
| --------------------------------------------------------------------CTGTGCAAATCCATGCAAAACTGA------------------------ | 24 | - | - | - | - | 1 | - | - | - | 1 | 1 | |
| -------------------------------------------------------------------------CAAATCCATGCAAAACTG------------------------- | 18 | - | - | - | - | 1 | - | - | - | 1 | - | |
| ---------------------------------------------------------------------TGTGCAAATCCATGCAAAACTGATTG--------------------- | 26 | - | - | - | - | 1 | - | - | - | - | - | |
| --------------------------AGTTTTGCAGATTTGCAGTTCAGC------------------------------------------------------------------ | 24 | - | - | - | - | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------GCAAATCCATGCAAAACT-------------------------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| rat | --------ACATTGCTACTTACGGTTAGTTTTGCAGATTTGCAGTTCAGCGTATATGTGGATATATGGCTGTGCAAATCCATGCAAAACTGATTGTGATGATGT------------ | |||||||||||
| human | -------------------------TAGTTTTGCAGGTTTGCATTTCAGCGTATATATGTATATGTGGCTGTGCAAATCCATGCAAAACTG------------------------- | |||||||||||
| mouse | GCGCAAGGACATTGCTACTTACGATTAGTTTTGCAGATTTGCAGTTCAGCGTATATGTGAATATATGGCTGTGCAAATCCATGCAAAACTGATTGTGGGAATGTGTACCTTTCTGC | |||||||||||
| *********** ****** ************ ** **** ************************** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053702 ENSRNOG00000035579 rno-mir-19b-2 | |||||||||||
| rat | ((((((....(((((((((((((((((((((((((...((((((((((....)))))).))))))))))))..))))))))))))))))))))))) | 1.000 -38.40 | ||||||||||
| human | (((((((((((((((((((....(((((((....)))))))....))))))).)).)))))))))) | 1.000 -28.00 | ||||||||||
| mouse | (((.((((((((.....((((((((((((((((((((((((((...((((((((((....))))))).)))))))))))..))))))))))))))))))...)))).))))..))) | 0.998 -48.30 | ||||||||||
| rat | chromosome:X:139740932:139741027:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000053702|ENSRNOG00000035579 ## ENSRNOG00000035579|miRNA|rno-mir-19b-2|rno-mir-19b-2 [Source:miRBase;Acc:MI0000848] ## {MIR: rno-mir-19b-2} |
| human | chromosome:X:133131347:133131482:-1 | Same_strand|Boundary_non-coding|ENST00000385077|ENSG00000207812|miRNA|hsa-mir-19b-2 [Source:miRBase;Acc:MI0000075] ## {MIR: hsa-mir-19b-2} |
| mouse | chromosome:X:50095144:50095259:-1 | Same_strand|Boundary_non-coding|ENSMUST00000083539|ENSMUSG00000065473|miRNA|mmu-mir-19b-2 [Source:miRBase;Acc:MI0000546] ## {MIR: mmu-mir-19b-2} |
sblock4670 (miRBase rno-mir-19b-1) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-19b-1 | 0.001 | no | no | 0.37/0.48 | 18/25/0.86 | 0.0 0.0 | 0.5 0.7 | 236 92182 | 0 0 | 10 10 | 0 0 | 15 10 | 0 2 | 5arm_loop 3arm | 1 2 | nd nd | 0.09 0.08 | 2 1 | 175523 | 10 | 2 | 3 |
| Located in cluster 26: rno-mir-17, rno-mir-18a, rno-mir-19a, rno-mir-20a, rno-mir-19b, rno-mir-92a |
| Member of family miR-19a/19b (seed GUGCAAA): rno-mir-19b, rno-mir-19a, rno-mir-19b |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------------------------------------GUGCAAA-------------------------------------------- | 173162 | miR-19a/19b | |||||||||
| seed | ------------------------------------------------------------------------UGCAAAU------------------------------------------- | 1389 | novel | |||||||||
| seed | ----------------------------------------------------------------------UGUGCAA--------------------------------------------- | 491 | novel | |||||||||
| seed | ---------------------------------GUUUUGC---------------------------------------------------------------------------------- | 446 | novel | |||||||||
| seed | -------------------------------------------------------------------------GCAAAUC------------------------------------------ | 9 | novel | |||||||||
| seed | --------------------------------------------------------------------------CAAAUCC----------------------------------------- | 8 | novel | |||||||||
| seed | -----------------------------------------------------------------------------AUCCAUG-------------------------------------- | 7 | novel | |||||||||
| seed | ----------------------------------------------------------------------------AAUCCAU--------------------------------------- | 7 | novel | |||||||||
| seed | ---------------------------------------------------------------------------AAAUCCA---------------------------------------- | 4 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------TGTGCAAATCCATGCAAAACTG------------------------------ | 22 | 1872 | 1464 | 5829 | 5631 | 17095 | 18671 | 2146 | 2720 | 5626 | 8233 | |
| ----------------------------------------------------------------------TGTGCAAATCCATGCAAAACTGAC---------------------------- | 24 | 1762 | 1126 | 5692 | 4813 | 9030 | 9654 | 1445 | 1730 | 5062 | 6721 | |
| ----------------------------------------------------------------------TGTGCAAATCCATGCAAA---------------------------------- | 18 | 682 | 550 | 2262 | 2016 | 5521 | 4843 | 622 | 1060 | 1488 | 2040 | |
| ----------------------------------------------------------------------TGTGCAAATCCATGCAAAAC-------------------------------- | 20 | 567 | 402 | 1673 | 1744 | 4707 | 4284 | 470 | 764 | 1298 | 1728 | |
| ----------------------------------------------------------------------TGTGCAAATCCATGCAAAACT------------------------------- | 21 | 592 | 430 | 1028 | 1128 | 3202 | 3597 | 452 | 674 | 1032 | 1359 | |
| ----------------------------------------------------------------------TGTGCAAATCCATGCAAAA--------------------------------- | 19 | 112 | 110 | 298 | 304 | 680 | 850 | 89 | 158 | 283 | 345 | |
| rno-miR-19b | ----------------------------------------------------------------------TGTGCAAATCCATGCAAAACTGA----------------------------- | 23 | 36 | 18 | 200 | 172 | 278 | 251 | 45 | 53 | 110 | 223 |
| -----------------------------------------------------------------------GTGCAAATCCATGCAAAACTG------------------------------ | 21 | 14 | 16 | 47 | 47 | 176 | 113 | 26 | 18 | 53 | 71 | |
| -----------------------------------------------------------------------GTGCAAATCCATGCAAAACTGAC---------------------------- | 23 | 17 | 7 | 79 | 67 | 149 | 90 | 21 | 25 | 47 | 49 | |
| ---------------------------------------------------------------------CTGTGCAAATCCATGCAAAACTG------------------------------ | 23 | 1 | 1 | - | 10 | 73 | 50 | 1 | 4 | 24 | 12 | |
| --------------------------------AGTTTTGCAGGTTTGCATCCAGC------------------------------------------------------------------- | 23 | 9 | - | 25 | 18 | 55 | 30 | 7 | 6 | 13 | 12 | |
| --------------------------------AGTTTTGCAGGTTTGCATCCAG-------------------------------------------------------------------- | 22 | 3 | 7 | 32 | 8 | 38 | 19 | 5 | 4 | 7 | 3 | |
| -----------------------------------------------------------------------GTGCAAATCCATGCAAAAC-------------------------------- | 19 | 3 | - | 9 | 17 | 31 | 29 | 5 | 9 | 15 | 6 | |
| -----------------------------------------------------------------------GTGCAAATCCATGCAAAACT------------------------------- | 20 | 5 | 5 | 3 | 12 | 33 | 27 | 5 | 9 | 2 | 14 | |
| ---------------------------------------------------------------------CTGTGCAAATCCATGCAAAACTGAC---------------------------- | 25 | 1 | - | 3 | 7 | 36 | 32 | 2 | 4 | 10 | 9 | |
| ---------------------------------------------------------------------CTGTGCAAATCCATGCAA----------------------------------- | 18 | - | 1 | 3 | 2 | 33 | 19 | 1 | - | 7 | 1 | |
| --------------------------------AGTTTTGCAGGTTTGCATCCA--------------------------------------------------------------------- | 21 | 1 | - | 8 | 9 | 19 | 12 | 2 | 3 | 2 | 8 | |
| ---------------------------------------------------------------------CTGTGCAAATCCATGCAAAAC-------------------------------- | 21 | - | - | 1 | 1 | 19 | 22 | - | 1 | 8 | 2 | |
| ---------------------------------------------------------------------CTGTGCAAATCCATGCAAAACT------------------------------- | 22 | 5 | 1 | 2 | 1 | 13 | 9 | 1 | 4 | 7 | 4 | |
| ---------------------------------------------------------------------CTGTGCAAATCCATGCAAA---------------------------------- | 19 | - | - | 1 | - | 14 | 14 | 1 | 1 | 3 | 3 | |
| --------------------------------AGTTTTGCAGGTTTGCATCC---------------------------------------------------------------------- | 20 | 3 | 1 | 6 | 5 | 7 | 3 | - | 1 | 6 | 3 | |
| --------------------------------AGTTTTGCAGGTTTGCAT------------------------------------------------------------------------ | 18 | 1 | - | 4 | 2 | 6 | 4 | 1 | - | 3 | 2 | |
| --------------------------------AGTTTTGCAGGTTTGCATC----------------------------------------------------------------------- | 19 | 2 | - | 2 | 3 | 3 | 2 | 1 | - | 2 | 1 | |
| -----------------------------------------------------------------------GTGCAAATCCATGCAAAA--------------------------------- | 18 | 1 | - | - | 2 | 7 | 3 | - | - | - | - | |
| ----------------------------------------------------------------------TGTGCAAATCCATGCAAAACTGACT--------------------------- | 25 | - | - | 3 | - | 2 | 3 | - | - | 1 | 1 | |
| --------------------------------AGTTTTGCAGGTTTGCATCCAGCT------------------------------------------------------------------ | 24 | - | - | 1 | - | 1 | 1 | - | - | 4 | - | |
| ----------------------------------------------------------------------------AATCCATGCAAAACTGAC---------------------------- | 18 | - | - | 3 | 2 | - | - | 1 | 1 | - | - | |
| ---------------------------------------------------------------------------AAATCCATGCAAAACTGAC---------------------------- | 19 | - | - | 4 | 1 | 2 | - | - | - | - | - | |
| -----------------------------------------------------------------------GTGCAAATCCATGCAAAACTGA----------------------------- | 22 | - | - | 2 | 1 | 1 | 1 | - | - | - | - | |
| ------------------------------------------------------------------------TGCAAATCCATGCAAAACTG------------------------------ | 20 | - | - | - | 2 | 2 | 1 | - | - | - | - | |
| -------------------------------------------------------------------------GCAAATCCATGCAAAACTG------------------------------ | 19 | - | - | - | - | - | 3 | - | - | 2 | - | |
| ------------------------------------------------------------------------TGCAAATCCATGCAAAACTGAC---------------------------- | 22 | - | - | 3 | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------CTGTGCAAATCCATGCAAAA--------------------------------- | 20 | - | - | - | - | 1 | 2 | - | - | - | - | |
| ---------------------------------------------------------------------CTGTGCAAATCCATGCAAAACTGA----------------------------- | 24 | - | - | - | - | 1 | - | - | - | 1 | 1 | |
| --------------------------------------------------------------------------CAAATCCATGCAAAACTGAC---------------------------- | 20 | - | - | - | - | 1 | - | - | 1 | - | - | |
| -------------------------------------------------------------------------GCAAATCCATGCAAAACTGAC---------------------------- | 21 | - | - | - | - | 1 | - | - | - | 1 | - | |
| --------------------------------------------------------------------------CAAATCCATGCAAAACTG------------------------------ | 18 | - | - | - | - | 1 | - | - | - | 1 | - | |
| -------------------------------------------------------------------------GCAAATCCATGCAAAACT------------------------------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| rat | -----------------CACTGGTCTATGGTTAGTTTTGCAGGTTTGCATCCAGCTGTATAATATTCTGCTGTGCAAATCCATGCAAAACTGACTGTGGTGGTG------------------ | |||||||||||
| human | ACTGTCCTGTTACTGAACACTGTTCTATGGTTAGTTTTGCAGGTTTGCATCCAGCTGTGTGATATTCTGCTGTGCAAATCCATGCAAAACTGACTGTGGTAGTGAAAAGTCTGTAGAAAAGT | |||||||||||
| mouse | ACTGTCCTGTTATTGAGCACTGGTCTATGGTTAGTTTTGCAGGTTTGCATCCAGCTGTATAATATTCTGCTGTGCAAATCCATGCAAAACTGACTGTGGTGGTGAAAAGTCTGTAGAGAAGT | |||||||||||
| ***** *********************************** * *************************************** *** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053585 ENSRNOG00000035462 rno-mir-19b-1 | |||||||||||
| rat | ((((...(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))).)))) | 1.000 -38.02 | ||||||||||
| human | (((...(((..(((...(((((..(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))))))))...)))...)))...))) | 0.994 -42.72 | ||||||||||
| mouse | (((.(((((..(((...((((...(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))).))))...)))...))).))))) | 0.986 -41.72 | ||||||||||
| rat | chromosome:15:99854320:99854406:1 | Same_strand|Boundary_non-coding|ENSRNOT00000053585|ENSRNOG00000035462 ## Same_strand|Exonic_non-coding|ENSRNOT00000053585|ENSRNOG00000035462 ## ENSRNOG00000035462|miRNA|rno-mir-19b-1|rno-mir-19b-1 [Source:miRBase;Acc:MI0000847] ## {MIR: rno-mir-19b-1} |
| human | chromosome:13:90801430:90801551:1 | Same_strand|Exonic_non-coding|ENST00000400280|ENSG00000215417|protein_coding|Putative microRNA host gene 1 protein [Source:UniProtKB/Swiss-Prot;Acc:Q75NE6] ## Same_strand|Intronic_coding|ENST00000400282|ENSG00000215417|protein_coding|Putative microRNA host gene 1 protein [Source:UniProtKB/Swiss-Prot;Acc:Q75NE6] ## Same_strand|Boundary_non-coding|ENST00000384829|ENSG00000207560|miRNA|hsa-mir-19b-1 [Source:miRBase;Acc:MI0000074] ## {MIR: hsa-mir-19b-1} |
| mouse | chromosome:14:115443510:115443631:1 | Same_strand|Boundary_non-coding|ENSMUST00000102301|ENSMUSG00000076256|miRNA|mmu-mir-19b-1 [Source:miRBase;Acc:MI0000718] ## {MIR: mmu-mir-19b-1} |
©2008 InteRNA Genomics B.V.