rno-mir-20a
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-20a 5arm | 480 | 537 | 846 | 1031 | 2354 | 2968 | 322 | 764 | 1168 | 767 |
| rno-mir-20a 3arm | 53 | 26 | 54 | 43 | 214 | 189 | 18 | 28 | 69 | 57 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-20a 5arm | 0.016 | 0.023 | 0.046 | 0.061 | 0.115 | 0.225 | 0.025 | 0.040 | 0.077 | 0.051 |
| rno-mir-20a 3arm | 0.002 | 0.001 | 0.003 | 0.003 | 0.010 | 0.014 | 0.001 | 0.001 | 0.005 | 0.004 |
sblock4669 (miRBase rno-mir-20a) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-20a | 0.001 | no | no | 0.33/0.48 | 18/26/0.49 | 0.0 0.0 | 0.2 0.7 | 3994 376 | 0 0 | 10 10 | 0 0 | 15 11 | 6 5 | 5arm 3arm | 1 1 | nd nd | 0.19 0.18 | 2 2 | 11988 | 10 | 0 | 2 |
| Located in cluster 26: rno-mir-17, rno-mir-18a, rno-mir-19a, rno-mir-20a, rno-mir-19b, rno-mir-92a |
| Member of family miR-106b/17/20a/20b/93 (seed AAAGUGC): rno-mir-20b, rno-mir-17, rno-mir-106b, rno-mir-93, rno-mir-17, rno-mir-20a, block1599388_cand |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------------------AAAGUGC--------------------------------------------------------------------------------- | 10173 | miR-106b/17/20a/20b/93 | |||||||||
| seed | -------------------------------------AAGUGCU-------------------------------------------------------------------------------- | 1019 | miR-291a | |||||||||
| seed | ------------------------------------------------------------------------CUGCAUU--------------------------------------------- | 738 | miR-20a* | |||||||||
| seed | -----------------------------------UAAAGUG---------------------------------------------------------------------------------- | 24 | novel | |||||||||
| seed | --------------------------------------AGUGCUU------------------------------------------------------------------------------- | 10 | novel | |||||||||
| seed | -----------------------------------------------------------------------ACUGCAU---------------------------------------------- | 10 | miR-217 | |||||||||
| seed | ---------------------------------------GUGCUUA------------------------------------------------------------------------------ | 5 | novel | |||||||||
| seed | ----------------------------------------UGCUUAU----------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | -------------------------------------------------------------------------UGCAUUA-------------------------------------------- | 2 | novel | |||||||||
| seed | ----------------------------------CUAAAGU----------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------------------CUUAUAG--------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------------------------------------GCUUAUA---------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------------------------------------------------CUACUGC------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------TAAAGTGCTTATAGTGCAG---------------------------------------------------------------------- | 19 | 213 | 259 | 317 | 549 | 934 | 1485 | 124 | 392 | 541 | 390 | |
| -----------------------------------TAAAGTGCTTATAGTGCAGGT-------------------------------------------------------------------- | 21 | 90 | 83 | 76 | 29 | 485 | 360 | 50 | 69 | 188 | 66 | |
| rno-miR-20a | -----------------------------------TAAAGTGCTTATAGTGCAGGTAG------------------------------------------------------------------ | 23 | 66 | 35 | 123 | 120 | 177 | 285 | 25 | 87 | 140 | 115 |
| -----------------------------------TAAAGTGCTTATAGTGCAGG--------------------------------------------------------------------- | 20 | 37 | 50 | 83 | 79 | 245 | 227 | 38 | 45 | 79 | 56 | |
| -----------------------------------TAAAGTGCTTATAGTGCA----------------------------------------------------------------------- | 18 | 14 | 23 | 47 | 56 | 124 | 155 | 21 | 26 | 45 | 35 | |
| ------------------------------------AAAGTGCTTATAGTGCAGGT-------------------------------------------------------------------- | 20 | 18 | 20 | 36 | 43 | 87 | 130 | 14 | 33 | 42 | 31 | |
| -----------------------------------TAAAGTGCTTATAGTGCAGGTAGT----------------------------------------------------------------- | 24 | 5 | 13 | 74 | 65 | 100 | 101 | 15 | 35 | 25 | 18 | |
| -----------------------------------TAAAGTGCTTATAGTGCAGGTA------------------------------------------------------------------- | 22 | 17 | 27 | 20 | 34 | 60 | 87 | 12 | 35 | 47 | 21 | |
| -----------------------------------------------------------------------ACTGCATTACGAGCACTTACAG------------------------------- | 22 | 18 | 6 | 18 | 16 | 75 | 69 | 4 | 7 | 21 | 26 | |
| ------------------------------------AAAGTGCTTATAGTGCAGGTAG------------------------------------------------------------------ | 22 | 10 | 9 | 18 | 10 | 34 | 51 | 12 | 12 | 19 | 18 | |
| ------------------------------------AAAGTGCTTATAGTGCAG---------------------------------------------------------------------- | 18 | 4 | 9 | 21 | 19 | 42 | 37 | 7 | 10 | 18 | 7 | |
| rno-miR-20a* | -----------------------------------------------------------------------ACTGCATTACGAGCACTTACA-------------------------------- | 21 | 10 | 9 | 6 | 12 | 47 | 43 | 4 | 8 | 7 | 5 |
| -----------------------------------------------------------------------ACTGCATTACGAGCACTTAC--------------------------------- | 20 | 9 | 4 | 11 | 5 | 34 | 29 | 3 | 5 | 6 | 10 | |
| -----------------------------------------------------------------------ACTGCATTACGAGCACTTACAGT------------------------------ | 23 | 11 | 4 | 9 | 6 | 28 | 25 | 4 | 2 | 19 | 7 | |
| ------------------------------------AAAGTGCTTATAGTGCAGGTA------------------------------------------------------------------- | 21 | 1 | 7 | 8 | 9 | 20 | 19 | 1 | 7 | 11 | 4 | |
| ------------------------------------AAAGTGCTTATAGTGCAGGTAGT----------------------------------------------------------------- | 23 | 1 | - | 14 | 13 | 14 | 15 | 2 | 4 | 4 | - | |
| -----------------------------------------------------------------------ACTGCATTACGAGCACTT----------------------------------- | 18 | 2 | - | 8 | 1 | 13 | 10 | - | 3 | 10 | 6 | |
| -----------------------------------------------------------------------ACTGCATTACGAGCACTTA---------------------------------- | 19 | 3 | 2 | 1 | 3 | 10 | 11 | 2 | 3 | 5 | 3 | |
| ------------------------------------AAAGTGCTTATAGTGCAGG--------------------------------------------------------------------- | 19 | 3 | 2 | 8 | 2 | 13 | 3 | - | 3 | 4 | 4 | |
| ----------------------------------CTAAAGTGCTTATAGTGCAG---------------------------------------------------------------------- | 20 | - | - | 1 | 1 | 6 | 2 | 1 | 1 | - | - | |
| ----------------------------------------------------------------------TACTGCATTACGAGCACTTAC--------------------------------- | 21 | - | 1 | - | - | 3 | - | 1 | - | - | - | |
| ----------------------------------CTAAAGTGCTTATAGTGCAGGT-------------------------------------------------------------------- | 22 | 1 | - | - | - | 2 | 1 | - | - | 1 | - | |
| -------------------------------------AAGTGCTTATAGTGCAGGT-------------------------------------------------------------------- | 19 | - | - | - | - | 1 | 4 | - | - | - | - | |
| ----------------------------------------------------------------------TACTGCATTACGAGCACTTACA-------------------------------- | 22 | - | - | 1 | - | - | 2 | - | - | - | - | |
| --------------------------------------AGTGCTTATAGTGCAGGTAG------------------------------------------------------------------ | 20 | - | - | - | - | 2 | 1 | - | - | - | - | |
| ----------------------------------CTAAAGTGCTTATAGTGCAGGTA------------------------------------------------------------------- | 23 | - | - | - | - | - | 2 | - | 1 | - | - | |
| -----------------------------------TAAAGTGCTTATAGTGCAGGTAGTG---------------------------------------------------------------- | 25 | - | - | - | - | 1 | - | - | 1 | 1 | - | |
| ------------------------------------AAAGTGCTTATAGTGCAGGTAGTG---------------------------------------------------------------- | 24 | - | - | - | - | 1 | 1 | - | - | - | - | |
| -------------------------------------AAGTGCTTATAGTGCAGGTAG------------------------------------------------------------------ | 21 | - | - | - | 1 | - | - | - | 1 | - | - | |
| ---------------------------------------GTGCTTATAGTGCAGGTAG------------------------------------------------------------------ | 19 | - | - | - | 1 | - | 1 | - | - | - | - | |
| -------------------------------------AAGTGCTTATAGTGCAGGTAGT----------------------------------------------------------------- | 22 | - | - | - | - | - | - | - | - | - | 2 | |
| --------------------------------------AGTGCTTATAGTGCAGGTA------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | - | |
| ---------------------------------ACTAAAGTGCTTATAGTGCAGGT-------------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------TACTGCATTACGAGCACTTA---------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------CTGCATTACGAGCACTTACAG------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------GCTTATAGTGCAGGTAGT----------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------------TACTGCATTACGAGCACTT----------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------CTAAAGTGCTTATAGTGC------------------------------------------------------------------------ | 18 | - | - | - | - | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------CTGCATTACGAGCACTTAC--------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------CTAAAGTGCTTATAGTGCAGG--------------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------CTAAAGTGCTTATAGTGCA----------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------TAAAGTGCTTATAGTGCAGGTAGTGT--------------------------------------------------------------- | 26 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------AAGTGCTTATAGTGCAGG--------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | - | - | |
| --------------------------------------------------------------------TCTACTGCATTACGAGCACTTAC--------------------------------- | 23 | - | - | - | - | 1 | - | - | - | - | - | |
| --------------------------------------AGTGCTTATAGTGCAGGTAGT----------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------CTAAAGTGCTTATAGTGCAGGTAG------------------------------------------------------------------ | 24 | - | - | - | - | - | - | - | 1 | - | - | |
| ----------------------------------------TGCTTATAGTGCAGGTAG------------------------------------------------------------------ | 18 | - | - | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------GTGCTTATAGTGCAGGTA------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | - | |
| rat | --------------------CAGCTTCTGTAGCACTAAAGTGCTTATAGTGCAGGTAGTGTGTCGTCATCTACTGCATTACGAGCACTTACAGTACTGCCAGCTG------------------- | |||||||||||
| human | ----GGTCTATCTGATGTGACAGCTTCTGTAGCACTAAAGTGCTTATAGTGCAGGTAGTGTTTAGTTATCTACTGCATTATGAGCACTTAAAGTACTGCTAGCTGTAGAACTCCAGCTTCGGCC | |||||||||||
| mouse | GCGTGGTGTGTGTGATGTGACAGCTTCTGTAGCACTAAAGTGCTTATAGTGCAGGTAGTGTGTAGCCATCTACTGCATTACGAGCACTTAAAGTACTGCCAGCTGTAGAACTCCAGCCTCGC-- | |||||||||||
| ***************************************** * * ************* ********* ******** ***** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053728 ENSRNOG00000035605 rno-mir-20a | |||||||||||
| rat | (((((...((((.(((.(((((((..((((((((.(((.(((....))))))))))))))..)))))))..))).)))).))))) | 1.000 -36.40 | ||||||||||
| human | ((((...(((..((.((((((...((((.(((.((((((((((((((((.((((((......)).))))))))))))))))))))..))).)))).))))))...))..)))....)))) | 0.981 -49.70 | ||||||||||
| mouse | (((.(((...((.((.((.((((((...((((.(((.(((((((..(((((((.((((.(((....))))))))))))))..)))))))..))).)))).))))))...))))))))).))) | 1.000 -48.20 | ||||||||||
| rat | chromosome:15:99854190:99854274:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053728|ENSRNOG00000035605 ## Same_strand|Boundary_non-coding|ENSRNOT00000053728|ENSRNOG00000035605 ## ENSRNOG00000035605|miRNA|rno-mir-20a|rno-mir-20a [Source:miRBase;Acc:MI0000638] ## {MIR: rno-mir-20a} |
| human | chromosome:13:90801296:90801415:1 | Same_strand|Exonic_non-coding|ENST00000400280|ENSG00000215417|protein_coding|Putative microRNA host gene 1 protein [Source:UniProtKB/Swiss-Prot;Acc:Q75NE6] ## Same_strand|Intronic_coding|ENST00000400282|ENSG00000215417|protein_coding|Putative microRNA host gene 1 protein [Source:UniProtKB/Swiss-Prot;Acc:Q75NE6] ## Same_strand|Boundary_non-coding|ENST00000362279|ENSG00000199149|miRNA|hsa-mir-20a [Source:miRBase;Acc:MI0000076] ## {MIR: hsa-mir-20a} |
| mouse | chromosome:14:115443370:115443491:1 | Same_strand|Boundary_non-coding|ENSMUST00000083508|ENSMUSG00000065442|miRNA|mmu-mir-20a [Source:miRBase;Acc:MI0000568] ## {MIR: mmu-mir-20a} |
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