rno-mir-20b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-20b 5arm | 13 | 14 | 42 | 79 | 1492 | 1158 | 43 | 88 | 299 | 56 |
| rno-mir-20b 3arm | 2 | 5 | 4 | 10 | 175 | 125.500 | 5 | 9.500 | 42 | 19 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-20b 5arm | 0.000 | 0.001 | 0.002 | 0.005 | 0.073 | 0.088 | 0.003 | 0.005 | 0.020 | 0.004 |
| rno-mir-20b 3arm | 0.000 | 0.000 | 0.000 | 0.001 | 0.009 | 0.010 | 0.000 | 0.000 | 0.003 | 0.001 |
sblock12717 (miRBase rno-mir-20b) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-20b | 0.001 | no | no | 0.43/0.57 | 18/25/0.59 | 0.0 0.3 | 1.7 2.6 | 1938 228 | 0 0 | 10 10 | 0 0 | 7 4 | 2 4 | 5arm 3arm | 1 1 | nd nd | 0.09 0.06 | 1 1 | 3686 | 10 | 1 | 2 |
| Located in cluster 86: rno-mir-363, rno-mir-92a, rno-mir-19b, rno-mir-20b, hsa-mir-18b, rno-mir-17 |
| Member of family miR-106b/17/20a/20b/93 (seed AAAGUGC): rno-mir-20b, rno-mir-17, rno-mir-106b, rno-mir-93, rno-mir-17, rno-mir-20a, block1599388_cand |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------AAAGUGC----------------------------------------------------------------------------- | 3189 | miR-106b/17/20a/20b/93 | |||||||||
| seed | -------------------------------------------------------------CUGCAGU--------------------------------------- | 237 | miR-17/20b | |||||||||
| seed | ------------------------------------------------------------ACUGCAG---------------------------------------- | 133 | novel | |||||||||
| seed | ------------------------AAGUGCU---------------------------------------------------------------------------- | 83 | miR-291a | |||||||||
| seed | --------------------------------------------------------------UGCAGUG-------------------------------------- | 20 | novel | |||||||||
| seed | -------------------------AGUGCUC--------------------------------------------------------------------------- | 12 | novel | |||||||||
| seed | -----------------------------------------------------------UACUGCA----------------------------------------- | 10 | novel | |||||||||
| seed | ----------------------------------------------------------CUACUGC------------------------------------------ | 2 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------CAAAGTGCTCATAGTGCAG------------------------------------------------------------------ | 19 | 9 | 3 | 16 | 23 | 560 | 434 | 9 | 34 | 108 | 24 | |
| ----------------------CAAAGTGCTCATAGTGCAGGTAG-------------------------------------------------------------- | 23 | 1 | 8 | 11 | 17 | 347 | 323 | 13 | 29 | 91 | 12 | |
| rno-miR-20b-5p | ----------------------CAAAGTGCTCATAGTGCAGGT---------------------------------------------------------------- | 21 | 1 | 1 | 3 | 8 | 274 | 144 | 6 | 6 | 22 | 5 |
| ----------------------CAAAGTGCTCATAGTGCAGGTA--------------------------------------------------------------- | 22 | 1 | - | 9 | 14 | 157 | 127 | 9 | 9 | 41 | 5 | |
| ----------------------CAAAGTGCTCATAGTGCA------------------------------------------------------------------- | 18 | - | 1 | 1 | 6 | 61 | 44 | 6 | 1 | 11 | 6 | |
| ----------------------CAAAGTGCTCATAGTGCAGG----------------------------------------------------------------- | 20 | 1 | 1 | 1 | 8 | 54 | 46 | - | 6 | 10 | 2 | |
| ------------------------------------------------------------ACTGCAGTGTGAGCACTTCTGGT------------------------ | 23 | - | - | 1 | - | 32 | 24 | - | 3 | 9 | 3 | |
| -----------------------------------------------------------TACTGCAGTGTGAGCACT------------------------------ | 18 | - | - | - | 2 | 26 | 10 | 1 | 1 | 6 | 4 | |
| ------------------------------------------------------------ACTGCAGTGTGAGCACTTCTG-------------------------- | 21 | - | 2 | 2 | 2 | 17 | 13 | 2 | - | 7 | 2 | |
| rno-miR-20b-3p | ------------------------------------------------------------ACTGCAGTGTGAGCACTTCTGG------------------------- | 22 | - | 2 | - | - | 12 | 13 | 2 | 1 | 3 | 6 |
| ------------------------------------------------------------ACTGCAGTGTGAGCACTTC---------------------------- | 19 | - | - | 1 | 1 | 21 | 10 | - | 1 | 3 | - | |
| -----------------------AAAGTGCTCATAGTGCAG------------------------------------------------------------------ | 18 | - | - | - | 2 | 9 | 19 | - | 2 | 4 | - | |
| -----------------------AAAGTGCTCATAGTGCAGGTAG-------------------------------------------------------------- | 22 | - | - | - | - | 12 | 9 | - | - | 9 | 1 | |
| ------------------------------------------------------------ACTGCAGTGTGAGCACTTCT--------------------------- | 20 | - | - | - | - | 14 | 14 | - | 1 | 1 | 1 | |
| -----------------------------------------------------------TACTGCAGTGTGAGCACTTCTG-------------------------- | 22 | 2 | - | - | - | 8 | 6 | - | 2 | 4 | 1 | |
| -----------------------------------------------------------TACTGCAGTGTGAGCACTTC---------------------------- | 20 | - | - | - | 2 | 10 | 5 | - | - | 2 | - | |
| -----------------------------------------------------------TACTGCAGTGTGAGCACTTCT--------------------------- | 21 | - | - | - | 1 | 12 | 3 | - | - | 1 | 1 | |
| -----------------------------------------------------------TACTGCAGTGTGAGCACTTCTGGT------------------------ | 24 | - | - | - | - | 8 | 4 | - | - | 1 | - | |
| ------------------------------------------------------------ACTGCAGTGTGAGCACTT----------------------------- | 18 | - | - | - | - | 2 | 5 | - | 1 | 2 | - | |
| ----------------------CAAAGTGCTCATAGTGCAGGTAGG------------------------------------------------------------- | 24 | - | - | - | - | 7 | 1 | - | 1 | - | - | |
| -----------------------AAAGTGCTCATAGTGCAGGT---------------------------------------------------------------- | 20 | - | - | - | - | 4 | 3 | - | - | 1 | - | |
| ------------------------AAGTGCTCATAGTGCAGGTAG-------------------------------------------------------------- | 21 | - | - | 1 | - | 1 | 5 | - | - | - | - | |
| -----------------------------------------------------------TACTGCAGTGTGAGCACTTCTGG------------------------- | 23 | - | - | - | - | 4 | 2 | - | - | - | 1 | |
| -------------------------------------------------------------CTGCAGTGTGAGCACTTCTG-------------------------- | 20 | - | - | - | - | 1 | 5 | - | - | - | - | |
| -----------------------AAAGTGCTCATAGTGCAGGTA--------------------------------------------------------------- | 21 | - | - | - | - | 2 | 2 | - | - | 1 | - | |
| ----------------------------------------------------------CTACTGCAGTGTGAGCACTTCT--------------------------- | 22 | - | - | - | - | - | 4 | - | - | 1 | - | |
| -------------------------------------------------------------CTGCAGTGTGAGCACTTCTGGT------------------------ | 22 | - | - | - | 2 | 1 | 1 | - | - | - | - | |
| ------------------------AAGTGCTCATAGTGCAGGT---------------------------------------------------------------- | 19 | - | - | - | - | 1 | 1 | - | - | 1 | 1 | |
| -------------------------------------------------------------CTGCAGTGTGAGCACTTCTGG------------------------- | 21 | - | - | - | - | 1 | 3 | - | - | - | - | |
| -------------------------------------------------------------CTGCAGTGTGAGCACTTC---------------------------- | 18 | - | - | - | - | 3 | 1 | - | - | - | - | |
| -----------------------------------------------------------TACTGCAGTGTGAGCACTT----------------------------- | 19 | - | - | - | - | 1 | 1 | - | - | 1 | - | |
| ----------------------------------------------------------CTACTGCAGTGTGAGCAC------------------------------- | 18 | - | - | - | - | 1 | 1 | - | - | 1 | - | |
| -------------------------------------------------------------CTGCAGTGTGAGCACTTCT--------------------------- | 19 | - | 1 | - | - | - | 1 | - | - | - | - | |
| -----------------------AAAGTGCTCATAGTGCAGG----------------------------------------------------------------- | 19 | - | - | - | - | 2 | - | - | - | - | - | |
| ------------------------------------------------------------ACTGCAGTGTGAGCACTTCTGGTAC---------------------- | 25 | - | - | - | - | - | 1 | - | - | - | - | |
| ----------------------------------------------------------CTACTGCAGTGTGAGCACT------------------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------TCTACTGCAGTGTGAGCAC------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | - | |
| ------------------------AAGTGCTCATAGTGCAGGTA--------------------------------------------------------------- | 20 | - | - | - | 1 | - | - | - | - | - | - | |
| ---------------------------------------------------------TCTACTGCAGTGTGAGCACTTC---------------------------- | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------------AAAGTGCTCATAGTGCAGGTAGG------------------------------------------------------------- | 23 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------------------------------CTACTGCAGTGTGAGCACTTC---------------------------- | 21 | - | - | - | - | - | 1 | - | - | - | - | |
| rat | ---------------GTAGTGCCAAAGTGCTCATAGTGCAGGTAGGTTTTGCTGCACTCTACTGCAGTGTGAGCACTTCTGGTACTC-------------------- | |||||||||||
| human | --AGATTGGGTCCTAGTAGTACCAAAGTGCTCATAGTGCAGGTAGTTTTGGCATGACTCTACTGTAGTATGGGCACTTCCAGTACTCTTGGAT-AACAAATCT---- | |||||||||||
| mouse | CAAGCTCGGATCCTAGTAGTGCCAAAGTGCTCATAGTGCAGGTAGTTTTTATACCACTCTACTGCAGTGTGAGCACTTCTAGTACTCCTGGATCAACCAAGGTCTTG | |||||||||||
| ***** ************************ *** ********* *** ** ******* ****** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000054662 ENSRNOG00000036558 rno-mir-20b | |||||||||||
| rat | ..((((((((((((((((((.(((((.(((((........)).)))))))).))))))))))).))))))). | 1.000 -37.90 | ||||||||||
| human | (((((..((((.((.(((((..(((((((((((.(((((..((((.......))))...))))).)))))))))))...))))))).)))) ....))))) | 1.000 -40.80 | ||||||||||
| mouse | ((((.((.(((((.((.(((((..(((((((((((.((((.((((.............)))))))).)))))))))))...))))).)))))))......)).)))) | 0.933 -42.62 | ||||||||||
| rat | chromosome:X:139741071:139741142:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000054662|ENSRNOG00000036558 ## ENSRNOG00000036558|miRNA|rno-mir-20b|rno-mir-20b [Source:miRBase;Acc:MI0003554] ## {MIR: rno-mir-20b} |
| human | chromosome:X:133131489:133131588:-1 | Same_strand|Boundary_non-coding|ENST00000384977|ENSG00000207710|miRNA|hsa-mir-20b [Source:miRBase;Acc:MI0001519] ## {MIR: hsa-mir-20b} |
| mouse | chromosome:X:50095274:50095380:-1 | Same_strand|Boundary_non-coding|ENSMUST00000102087|ENSMUSG00000076041|miRNA|mmu-mir-20b [Source:miRBase;Acc:MI0003536] ## {MIR: mmu-mir-20b} |
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