rno-mir-22
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-22 5arm | 1686 | 1049 | 2183 | 2550 | 577 | 395 | 1030 | 2499 | 512 | 974 |
| rno-mir-22 3arm | 1185.333 | 848 | 1498.500 | 1780.500 | 826 | 627 | 1322.500 | 2652 | 1465 | 3366 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-22 5arm | 0.056 | 0.046 | 0.118 | 0.151 | 0.028 | 0.030 | 0.080 | 0.132 | 0.034 | 0.065 |
| rno-mir-22 3arm | 0.039 | 0.037 | 0.081 | 0.106 | 0.040 | 0.048 | 0.103 | 0.140 | 0.097 | 0.224 |
sblock2707 (miRBase rno-mir-22) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-22 | 0.001 | no | no | 0.38/0.50 | 18/25/0.56 | 0.0 0.0 | 1.8 2.0 | 8959 6383 | 0 0 | 10 10 | 0 0 | 18 17 | 3 4 | 5arm 3arm | 1 1 | nd nd | 0.05 0.05 | 1 1 | 29541 | 10 | 2 | 2 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------------------------------------------AGCUGCC-------------------------------------------------- | 16048 | miR-22 | |||||||||
| seed | ---------------------------------------GUUCUUC---------------------------------------------------------------------------------------- | 13416 | miR-22* | |||||||||
| seed | --------------------------------------AGUUCUU----------------------------------------------------------------------------------------- | 29 | novel | |||||||||
| seed | ------------------------------------------------------------------------------GCUGCCA------------------------------------------------- | 25 | novel | |||||||||
| seed | ----------------------------------------------------------------------------AAGCUGC--------------------------------------------------- | 7 | novel | |||||||||
| seed | -------------------------------------------------------------------------------CUGCCAG------------------------------------------------ | 6 | novel | |||||||||
| seed | ----------------------------------------UUCUUCA--------------------------------------------------------------------------------------- | 5 | novel | |||||||||
| seed | -------------------------------------------UUCAGUG------------------------------------------------------------------------------------ | 2 | novel | |||||||||
| seed | -----------------------------------------UCUUCAG-------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------CUUCAGU------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------------AAGCTGCCAGTTGAAGAAC--------------------------------------- | 19 | 460 | 357 | 602 | 715 | 293 | 221 | 542 | 1027 | 474 | 803 | |
| rno-miR-22 | ----------------------------------------------------------------------------AAGCTGCCAGTTGAAGAACTGT------------------------------------ | 22 | 288 | 228 | 311 | 385 | 235 | 191 | 281 | 645 | 421 | 1575 |
| --------------------------------------AGTTCTTCAGTGGCAAGC------------------------------------------------------------------------------ | 18 | 487 | 349 | 606 | 800 | 181 | 142 | 406 | 824 | 145 | 314 | |
| rno-miR-22* | --------------------------------------AGTTCTTCAGTGGCAAGCTTTA-------------------------------------------------------------------------- | 22 | 584 | 265 | 663 | 722 | 164 | 112 | 223 | 672 | 150 | 281 |
| ----------------------------------------------------------------------------AAGCTGCCAGTTGAAGAACTG------------------------------------- | 21 | 169 | 73 | 247 | 295 | 151 | 114 | 219 | 451 | 300 | 448 | |
| ----------------------------------------------------------------------------AAGCTGCCAGTTGAAGAACT-------------------------------------- | 20 | 214 | 152 | 275 | 298 | 110 | 74 | 220 | 387 | 212 | 399 | |
| --------------------------------------AGTTCTTCAGTGGCAAGCT----------------------------------------------------------------------------- | 19 | 259 | 182 | 367 | 376 | 100 | 61 | 215 | 401 | 84 | 182 | |
| --------------------------------------AGTTCTTCAGTGGCAAGCTTT--------------------------------------------------------------------------- | 21 | 195 | 166 | 198 | 274 | 57 | 30 | 94 | 309 | 68 | 127 | |
| ----------------------------------------------------------------------------AAGCTGCCAGTTGAAGAA---------------------------------------- | 18 | 76 | 68 | 87 | 109 | 54 | 44 | 95 | 227 | 86 | 181 | |
| --------------------------------------AGTTCTTCAGTGGCAAGCTT---------------------------------------------------------------------------- | 20 | 116 | 61 | 121 | 141 | 39 | 34 | 70 | 181 | 30 | 42 | |
| --------------------------------------AGTTCTTCAGTGGCAAGCTTTAT------------------------------------------------------------------------- | 23 | 39 | 23 | 220 | 231 | 34 | 14 | 17 | 103 | 30 | 22 | |
| ----------------------------------------------------------------------------AAGCTGCCAGTTGAAGAACTGTT----------------------------------- | 23 | 12 | 1 | 18 | 26 | 8 | 3 | 8 | 23 | 10 | 37 | |
| ----------------------------------------------------------------------------AAGCTGCCAGTTGAAGAACTGTTG---------------------------------- | 24 | 2 | - | - | 1 | - | 1 | 2 | 1 | 3 | 3 | |
| -----------------------------------------------------------------------------AGCTGCCAGTTGAAGAAC--------------------------------------- | 18 | - | 1 | - | 4 | - | - | 1 | 1 | - | 2 | |
| -------------------------------------TAGTTCTTCAGTGGCAAGC------------------------------------------------------------------------------ | 19 | - | - | 2 | 1 | - | 1 | - | 3 | - | 1 | |
| -----------------------------------------------------------------------------AGCTGCCAGTTGAAGAACT-------------------------------------- | 19 | - | - | - | 1 | - | - | 1 | - | - | 5 | |
| --------------------------------------AGTTCTTCAGTGGCAAGCTTTATGT----------------------------------------------------------------------- | 25 | - | - | 1 | - | - | - | 2 | - | 2 | 2 | |
| -------------------------------------TAGTTCTTCAGTGGCAAGCT----------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | 1 | 3 | 2 | 1 | |
| -------------------------------------TAGTTCTTCAGTGGCAAG------------------------------------------------------------------------------- | 18 | - | 1 | - | - | 2 | 1 | 1 | 1 | - | - | |
| -----------------------------------------------------------------------------AGCTGCCAGTTGAAGAACTGT------------------------------------ | 21 | - | - | 1 | 1 | 2 | - | - | 1 | - | 1 | |
| --------------------------------------AGTTCTTCAGTGGCAAGCTTTATG------------------------------------------------------------------------ | 24 | 1 | 1 | 1 | - | - | - | - | 2 | - | 1 | |
| ------------------------------------------------------------------------------GCTGCCAGTTGAAGAACTGT------------------------------------ | 20 | 1 | - | - | - | - | 1 | 1 | - | - | 1 | |
| -------------------------------------TAGTTCTTCAGTGGCAAGCTTT--------------------------------------------------------------------------- | 22 | 1 | - | - | 2 | - | - | - | - | 1 | - | |
| -------------------------------------TAGTTCTTCAGTGGCAAGCTT---------------------------------------------------------------------------- | 21 | 2 | - | - | 1 | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------AAAGCTGCCAGTTGAAGAAC--------------------------------------- | 20 | 1 | 2 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------------AGCTGCCAGTTGAAGAACTG------------------------------------- | 20 | - | - | 1 | - | - | - | - | 1 | 1 | - | |
| ---------------------------------------GTTCTTCAGTGGCAAGCTTTA-------------------------------------------------------------------------- | 21 | 1 | - | - | 1 | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------------------AAAGCTGCCAGTTGAAGAA---------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | 1 | |
| ---------------------------------------GTTCTTCAGTGGCAAGCTTT--------------------------------------------------------------------------- | 20 | - | 1 | 1 | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------------GCTGCCAGTTGAAGAACT-------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | 1 | |
| ---------------------------------------------------------------------------AAAGCTGCCAGTTGAAGAACTGT------------------------------------ | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------TCTTCAGTGGCAAGCTTTAT------------------------------------------------------------------------- | 20 | - | - | 1 | - | - | - | - | - | - | - | |
| -------------------------------------TAGTTCTTCAGTGGCAAGCTTTA-------------------------------------------------------------------------- | 23 | - | - | - | 1 | - | - | - | - | - | - | |
| ------------------------------------------CTTCAGTGGCAAGCTTTA-------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------AAAGCTGCCAGTTGAAGA----------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------CTTCAGTGGCAAGCTTTAT------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------TTCTTCAGTGGCAAGCTTTA-------------------------------------------------------------------------- | 20 | - | - | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------TTCTTCAGTGGCAAGCTTTAT------------------------------------------------------------------------- | 21 | - | - | 1 | - | - | - | - | - | - | - | |
| rat | --------------------ACCTGGCTGAGCCGCAGTAGTTCTTCAGTGGCAAGCTTTATGTCCTGACCCAGCTAAAGCTGCCAGTTGAAGAACTGTTGCCCTCTGCCACTGGC------------------- | |||||||||||
| human | ---GTTCCTCTCACGCCCTCACCTGGCTGAGCCGCAGTAGTTCTTCAGTGGCAAGCTTTATGTCCTGACCCAGCTAAAGCTGCCAGTTGAAGAACTGTTGCCCTCTGCCCCTGGCTTCGAGGAGGAGGAGGAGC | |||||||||||
| mouse | CCTGTGCCTCCCACACCCTCACCTGGCTGAGCCGCAGTAGTTCTTCAGTGGCAAGCTTTATGTCCTGACCCAGCTAAAGCTGCCAGTTGAAGAACTGTTGCCCTCTGCCCCTGGCTTCGTGGAGGAAGAGG--- | |||||||||||
| ***************************************************************************************** ***** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053743 ENSRNOG00000035620 rno-mir-22 | |||||||||||
| rat | .((((((.(((..((((((((((((((((((((.((((((.((.........))))))))))))).))))))))))))))).))).))))..)). | 1.000 -42.80 | ||||||||||
| human | (((((((((....((((.((.(((.(((..(((((((((((((((((((.(((((((.((.........))))))))))))).))))))))))))))).))).)))...))....))))..))).)))))) | 0.986 -57.70 | ||||||||||
| mouse | (((...(((.((((....(((...(((.(((..(((((((((((((((((((.(((((((.((.........))))))))))))).))))))))))))))).))).)))..)))....)))))))...))) | 0.984 -52.80 | ||||||||||
| rat | chromosome:10:62782723:62782817:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053743|ENSRNOG00000035620 ## ENSRNOG00000035620|miRNA|rno-mir-22|rno-mir-22 [Source:miRBase;Acc:MI0000851] ## {MIR: rno-mir-22} |
| human | chromosome:17:1563922:1564052:-1 | Same_strand|Exonic_non-coding|ENST00000334146|ENSG00000186594|protein_coding|Putative uncharacterized protein C17orf91 [Source:UniProtKB/Swiss-Prot;Acc:Q0VDD5] ## Same_strand|Boundary_non-coding|ENST00000362190|ENSG00000199060|miRNA|hsa-mir-22 [Source:miRBase;Acc:MI0000078] ## {SimpF: rank = 1 -1 FirstEF} ## {MIR: hsa-mir-22} |
| mouse | chromosome:11:75277198:75277328:1 | Same_strand|Boundary_non-coding|ENSMUST00000083595|ENSMUSG00000065529|miRNA|mmu-mir-22 [Source:miRBase;Acc:MI0000570] ## {MIR: mmu-mir-22} |
©2008 InteRNA Genomics B.V.