miR-Intess: rno-mir-23a

rno-mir-23a

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-23a 5arm	3	0	5	2	12	3	2	6	0	6
rno-mir-23a 3arm	17801	15281.500	10933.500	11525	31689	18521	36107	57061	28367	31127.500
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-23a 5arm	0.000	0	0.000	0.000	0.001	0.000	0.000	0.000	0	0.000
rno-mir-23a 3arm	0.592	0.667	0.592	0.683	1.543	1.404	2.808	3.003	1.870	2.071

sblock5756 (miRBase rno-mir-23a) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-23a	0.005	no	no	0.40/0.72	18/25/0.65	0.0 0.0	1.3 2.1	23 168023	0 0	8 10	0 0	9 8	4 5	5arm 3arm	1 2	nd nd	0.09 0.14	1 1	294922	10	2	1

Clusters
Located in cluster 39: rno-mir-24, rno-mir-27a, rno-mir-23a

Families
Member of family miR-23a/23b (seed UCACAUU): rno-mir-23b, rno-mir-23a, block2659609_cand

		reads	miRBase family seed
seed	--------------------------------------------------------------UCACAUU----------------------------------------	288541	miR-23a/23b
seed	-------------------------------------------------------------AUCACAU-----------------------------------------	4260	novel
seed	---------------------------------------------------------------CACAUUG---------------------------------------	1678	novel
seed	----------------------------------------------------------------ACAUUGC--------------------------------------	279	novel
seed	-----------------------------------------------------------------CAUUGCC-------------------------------------	102	novel
seed	--------------------------GGGUUCC----------------------------------------------------------------------------	39	miR-23a*
seed	------------------------------------------------------------------AUUGCCA------------------------------------	21	novel
seed	-------------------------------------------------------------------UUGCCAG-----------------------------------	1	novel
seed	------------------------------------------------------------AAUCACA------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	-------------------------------------------------------------ATCACATTGCCAGGGATT------------------------------	18	6452	5176	3753	4191	6754	3752	10108	16522	6756	7059
	-------------------------------------------------------------ATCACATTGCCAGGGATTTCCA--------------------------	22	4184	3740	2456	2568	8915	5300	9296	12588	8395	10644
rno-miR-23a	-------------------------------------------------------------ATCACATTGCCAGGGATTTCC---------------------------	21	4158	4142	3239	3094	7424	4084	9648	15822	6328	4798
	-------------------------------------------------------------ATCACATTGCCAGGGATTT-----------------------------	19	2295	1785	1086	1192	2988	1925	3652	7346	3829	4355
	-------------------------------------------------------------ATCACATTGCCAGGGATTTC----------------------------	20	2188	1562	1145	1346	3510	2101	4720	7490	2888	2774
	-------------------------------------------------------------ATCACATTGCCAGGGATTTCCAAC------------------------	24	1114	969	625	745	3215	2154	2291	3366	2334	3177
	-------------------------------------------------------------ATCACATTGCCAGGGATTTCCAA-------------------------	23	276	207	276	250	1509	642	790	1082	643	1236
	------------------------------------------------------------AATCACATTGCCAGGGAT-------------------------------	18	119	92	41	68	167	104	137	241	124	151
	------------------------------------------------------------AATCACATTGCCAGGGATT------------------------------	19	88	74	38	53	145	107	139	235	105	158
	------------------------------------------------------------AATCACATTGCCAGGGATTTCC---------------------------	22	74	56	63	48	165	96	125	246	115	85
	--------------------------------------------------------------TCACATTGCCAGGGATTTCCA--------------------------	21	42	34	30	28	74	39	76	107	75	67
	------------------------------------------------------------AATCACATTGCCAGGGATTTCCA--------------------------	23	31	24	9	15	73	39	62	79	73	84
	--------------------------------------------------------------TCACATTGCCAGGGATTTCC---------------------------	20	21	16	22	22	70	24	59	101	27	31
	--------------------------------------------------------------TCACATTGCCAGGGATTTCCAAC------------------------	23	9	13	6	5	39	27	25	42	28	30
	------------------------------------------------------------AATCACATTGCCAGGGATTT-----------------------------	20	20	10	8	9	31	15	23	50	21	32
	--------------------------------------------------------------TCACATTGCCAGGGATTT-----------------------------	18	9	9	11	8	18	20	30	48	32	31
	--------------------------------------------------------------TCACATTGCCAGGGATTTCCAA-------------------------	22	5	4	8	9	23	16	13	26	12	30
	--------------------------------------------------------------TCACATTGCCAGGGATTTC----------------------------	19	8	9	11	7	14	7	18	32	7	14
	-------------------------------------------------------------ATCACATTGCCAGGGATTTCCAACT-----------------------	25	10	4	2	-	24	11	14	16	23	13
	---------------------------------------------------------------CACATTGCCAGGGATTTCCA--------------------------	20	8	3	4	3	16	14	16	21	13	15
	---------------------------------------------------------------CACATTGCCAGGGATTTCC---------------------------	19	2	7	3	7	13	3	24	34	10	5
	------------------------------------------------------------AATCACATTGCCAGGGATTTC----------------------------	21	3	4	3	4	16	7	10	31	8	7
	----------------------------------------------------------------ACATTGCCAGGGATTTCCA--------------------------	19	6	7	4	3	6	5	9	8	4	4
	---------------------------------------------------------------CACATTGCCAGGGATTTCCAAC------------------------	22	5	2	2	-	1	3	3	9	2	6
	----------------------------------------------------------------ACATTGCCAGGGATTTCC---------------------------	18	3	3	1	-	3	1	6	10	1	1
	---------------------------------------------------------------CACATTGCCAGGGATTTC----------------------------	18	1	1	-	3	3	1	2	2	1	2
	-----------------------------------------------------------------CATTGCCAGGGATTTCCA--------------------------	18	-	1	1	3	1	2	1	4	-	2
	-------------------------GGGGTTCCTGGGGATGGGA-----------------------------------------------------------------	19	2	-	2	1	5	1	1	1	-	1
rno-miR-23a*	-------------------------GGGGTTCCTGGGGATGGGATTT--------------------------------------------------------------	22	1	-	1	1	4	2	1	1	-	2
	----------------------------------------------------------------ACATTGCCAGGGATTTCCAAC------------------------	21	1	-	1	-	1	2	2	2	4	-
	---------------------------------------------------------------CACATTGCCAGGGATTTCCAA-------------------------	21	-	-	-	-	3	1	3	-	1	1
	-------------------------GGGGTTCCTGGGGATGGG------------------------------------------------------------------	18	-	-	1	-	2	-	-	2	-	2
	-----------------------------------------------------------------CATTGCCAGGGATTTCCAAC------------------------	20	-	-	1	-	-	-	-	3	1	-
	----------------------------------------------------------------ACATTGCCAGGGATTTCCAA-------------------------	20	-	-	1	-	2	-	-	1	-	-
	-------------------------GGGGTTCCTGGGGATGGGAT----------------------------------------------------------------	20	-	-	-	-	1	-	-	1	-	1
	-------------------------GGGGTTCCTGGGGATGGGATT---------------------------------------------------------------	21	-	-	1	-	-	-	-	1	-	-
	------------------------------------------------------------------ATTGCCAGGGATTTCCAAC------------------------	19	-	-	-	-	-	-	-	1	-	-
	-----------------------------------------------------------AAATCACATTGCCAGGGA--------------------------------	18	-	-	-	-	1	-	-	-	-	-
	-----------------------------------------------------------------CATTGCCAGGGATTTCCAA-------------------------	19	-	-	-	-	-	1	-	-	-	-
rat	----------------CGGCCGGCTGGGGTTCCTGGGGATGGGATTTGATGCCAGTCACAAATCACATTGCCAGGGATTTCCAACTGACCC------------------
human	CCTCACCCCTGTGCCACGGCCGGCTGGGGTTCCTGGGGATGGGATTTGCTTCCTGTCACAAATCACATTGCCAGGGATTTCCAACCGACCCTGAGCTCTGCCACCGAGG
mouse	----------------------------GTTCCTGGGGATGGGATTTGATGCCAGTCACAAATCACATTGCCAGGGAT-------------------------------
	******************** * **********************
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000053767 ENSRNOG00000035644 rno-mir-23a
rat	.((.(((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).))).)).	1.000 -32.90
human	((((........((((.((.(((.((((((((((((.((((.((((((..........)))))).)))).))))))))).))).))).)).)).)).........))))	0.961 -42.03
mouse	((((((((.((((.((((((.((.....)))))))).)))).))))))))	1.000 -22.40

rat	chromosome:19:25638744:25638818:-1	Same_strand\|Exonic_non-coding\|ENSRNOT00000053767\|ENSRNOG00000035644 ## ENSRNOG00000035644\|miRNA\|rno-mir-23a\|rno-mir-23a [Source:miRBase;Acc:MI0000852] ## {MIR: rno-mir-23a}
human	chromosome:19:13808382:13808490:-1	Same_strand\|Boundary_non-coding\|ENST00000385245\|ENSG00000207980\|miRNA\|hsa-mir-23a [Source:miRBase;Acc:MI0000079] ## {MIR: hsa-mir-23a}
mouse	chromosome:8:86732429:86732478:1	Same_strand\|Exonic_non-coding\|ENSMUST00000083677\|ENSMUSG00000065611\|miRNA\|mmu-mir-23a [Source:miRBase;Acc:MI0000571] ## {MIR: mmu-mir-23a}

miR-Intess™

rno-mir-23a

sblock5756 (miRBase rno-mir-23a) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]