rno-mir-23b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-23b 5arm | 27 | 8 | 15 | 15 | 11 | 6 | 9 | 12 | 8 | 10 |
| rno-mir-23b 3arm | 39278.500 | 25259 | 20901 | 21338 | 17918.500 | 10243.500 | 35521 | 54895 | 45581.500 | 48583 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-23b 5arm | 0.001 | 0.000 | 0.001 | 0.001 | 0.001 | 0.000 | 0.001 | 0.001 | 0.001 | 0.001 |
| rno-mir-23b 3arm | 1.306 | 1.102 | 1.132 | 1.265 | 0.873 | 0.776 | 2.763 | 2.889 | 3.005 | 3.232 |
sblock4981 (miRBase rno-mir-23b) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-23b | 0.009 | no | no | 0.40/0.61 | 18/26/0.69 | 0.0 0.0 | 1.4 1.9 | 89 243976 | 0 0 | 10 10 | 0 0 | 20 17 | 0 2 | 5arm_loop 3arm | 1 2 | nd nd | 0.05 0.14 | 1 2 | 356095 | 10 | 2 | 2 |
| Located in cluster 27: rno-mir-24, rno-mir-27b, rno-mir-23b |
| Member of family miR-23a/23b (seed UCACAUU): rno-mir-23b, rno-mir-23a, block2659609_cand |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------------------------------------------------------UCACAUU--------------------------------------------------- | 337562 | miR-23a/23b | |||||||||
| seed | ----------------------------------------------------------------------------CACAUUG-------------------------------------------------- | 14678 | novel | |||||||||
| seed | --------------------------------------------------------------------------AUCACAU---------------------------------------------------- | 3001 | novel | |||||||||
| seed | -----------------------------------------------------------------------------ACAUUGC------------------------------------------------- | 477 | novel | |||||||||
| seed | ------------------------------------------------------------------------------CAUUGCC------------------------------------------------ | 205 | novel | |||||||||
| seed | --------------------------------------GGUUCCU---------------------------------------------------------------------------------------- | 115 | novel | |||||||||
| seed | --------------------------------------------------------------------------------UUGCCAG---------------------------------------------- | 29 | novel | |||||||||
| seed | -------------------------------------------------------------------------------AUUGCCA----------------------------------------------- | 20 | novel | |||||||||
| seed | -------------------------------------GGGUUCC----------------------------------------------------------------------------------------- | 4 | miR-23a* | |||||||||
| seed | ------------------------------------UGGGUUC------------------------------------------------------------------------------------------ | 1 | novel | |||||||||
| seed | -------------------------------------------------------------------------AAUCACA----------------------------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------------------------------------------------AAAUCAC------------------------------------------------------ | 1 | novel | |||||||||
| seed | ---------------------------------------GUUCCUG--------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------ATCACATTGCCAGGGATTACCAC------------------------------------ | 23 | 13500 | 8645 | 9143 | 8722 | 5673 | 3083 | 13147 | 18304 | 18796 | 17675 | |
| rno-miR-23b | --------------------------------------------------------------------------ATCACATTGCCAGGGATTACC-------------------------------------- | 21 | 10359 | 6960 | 4250 | 4475 | 3750 | 2425 | 7424 | 12237 | 10015 | 12155 |
| --------------------------------------------------------------------------ATCACATTGCCAGGGATT----------------------------------------- | 18 | 6452 | 5176 | 3753 | 4191 | 6754 | 3752 | 10108 | 16522 | 6756 | 7059 | |
| --------------------------------------------------------------------------ATCACATTGCCAGGGATTA---------------------------------------- | 19 | 4857 | 2843 | 1913 | 2093 | 2032 | 1117 | 3639 | 6150 | 5648 | 5772 | |
| --------------------------------------------------------------------------ATCACATTGCCAGGGATTAC--------------------------------------- | 20 | 3792 | 2133 | 1510 | 1755 | 1281 | 768 | 2667 | 4784 | 3715 | 4943 | |
| --------------------------------------------------------------------------ATCACATTGCCAGGGATTACCA------------------------------------- | 22 | 1220 | 814 | 850 | 977 | 905 | 486 | 1287 | 2044 | 1669 | 2355 | |
| ---------------------------------------------------------------------------TCACATTGCCAGGGATTACCAC------------------------------------ | 22 | 1214 | 650 | 779 | 636 | 403 | 187 | 1331 | 1580 | 1368 | 1117 | |
| ---------------------------------------------------------------------------TCACATTGCCAGGGATTACC-------------------------------------- | 20 | 427 | 228 | 204 | 189 | 111 | 72 | 307 | 467 | 326 | 331 | |
| -------------------------------------------------------------------------AATCACATTGCCAGGGAT------------------------------------------ | 18 | 119 | 92 | 41 | 68 | 167 | 104 | 137 | 241 | 124 | 151 | |
| -------------------------------------------------------------------------AATCACATTGCCAGGGATT----------------------------------------- | 19 | 88 | 74 | 38 | 53 | 145 | 107 | 139 | 235 | 105 | 158 | |
| ---------------------------------------------------------------------------TCACATTGCCAGGGATTAC--------------------------------------- | 19 | 128 | 78 | 64 | 68 | 52 | 21 | 134 | 193 | 111 | 132 | |
| ---------------------------------------------------------------------------TCACATTGCCAGGGATTACCA------------------------------------- | 21 | 130 | 59 | 92 | 72 | 55 | 27 | 107 | 203 | 116 | 118 | |
| ---------------------------------------------------------------------------TCACATTGCCAGGGATTA---------------------------------------- | 18 | 112 | 60 | 52 | 51 | 33 | 18 | 89 | 145 | 110 | 67 | |
| -------------------------------------------------------------------------AATCACATTGCCAGGGATTACC-------------------------------------- | 22 | 36 | 28 | 15 | 18 | 19 | 15 | 35 | 48 | 41 | 58 | |
| --------------------------------------------------------------------------ATCACATTGCCAGGGATTACCACG----------------------------------- | 24 | 33 | 17 | 36 | 35 | 12 | 4 | 42 | 53 | 27 | 23 | |
| ----------------------------------------------------------------------------CACATTGCCAGGGATTACCAC------------------------------------ | 21 | 32 | 17 | 25 | 16 | 17 | 5 | 31 | 38 | 43 | 39 | |
| -------------------------------------------------------------------------AATCACATTGCCAGGGATTACCAC------------------------------------ | 24 | 24 | 10 | 5 | 7 | 10 | 3 | 12 | 27 | 20 | 39 | |
| ----------------------------------------------------------------------------CACATTGCCAGGGATTACC-------------------------------------- | 19 | 24 | 11 | 10 | 13 | 4 | 7 | 8 | 33 | 17 | 13 | |
| -----------------------------------------------------------------------------ACATTGCCAGGGATTACCAC------------------------------------ | 20 | 10 | 5 | 10 | 16 | 5 | 7 | 15 | 14 | 13 | 16 | |
| -----------------------------------------------------------------------------ACATTGCCAGGGATTACC-------------------------------------- | 18 | 12 | 7 | 1 | 11 | 4 | 3 | 5 | 16 | 7 | 5 | |
| -------------------------------------------------------------------------AATCACATTGCCAGGGATTA---------------------------------------- | 20 | 4 | 8 | 2 | 4 | 5 | 7 | 6 | 9 | 10 | 13 | |
| -------------------------------------------------------------------------AATCACATTGCCAGGGATTAC--------------------------------------- | 21 | 4 | 5 | 3 | 2 | 2 | 1 | 6 | 7 | 12 | 8 | |
| ----------------------------------------------------------------------------CACATTGCCAGGGATTACCA------------------------------------- | 20 | 2 | 3 | 6 | 2 | 3 | 2 | 12 | 5 | 2 | 6 | |
| -------------------------------------GGGTTCCTGGCATGCTGATTT--------------------------------------------------------------------------- | 21 | 9 | 3 | 3 | 8 | 4 | 1 | 2 | 4 | 2 | 2 | |
| -------------------------------------GGGTTCCTGGCATGCTGAT----------------------------------------------------------------------------- | 19 | 4 | 1 | 4 | 6 | 2 | 1 | 4 | 5 | 1 | 3 | |
| ---------------------------------------------------------------------------TCACATTGCCAGGGATTACCACG----------------------------------- | 23 | 2 | 2 | 1 | 6 | 1 | 1 | 4 | 11 | 2 | 1 | |
| ----------------------------------------------------------------------------CACATTGCCAGGGATTAC--------------------------------------- | 18 | 4 | 1 | 1 | 3 | - | - | 4 | 11 | 3 | 3 | |
| -------------------------------------------------------------------------------ATTGCCAGGGATTACCAC------------------------------------ | 18 | 6 | 2 | 3 | 3 | - | - | 6 | 5 | 2 | 2 | |
| -------------------------------------GGGTTCCTGGCATGCTGA------------------------------------------------------------------------------ | 18 | 7 | 4 | 3 | 1 | 1 | 3 | 2 | 2 | 5 | 1 | |
| -------------------------------------------------------------------------AATCACATTGCCAGGGATTACCA------------------------------------- | 23 | 2 | - | 4 | 4 | 4 | 2 | 3 | 2 | 6 | - | |
| ---------------------------------------------------------------------------TCACATTGCCAGGGATTACCACGC---------------------------------- | 24 | 4 | - | - | 3 | 1 | - | 2 | 6 | 4 | 3 | |
| -----------------------------------------------------------------------------ACATTGCCAGGGATTACCA------------------------------------- | 19 | 5 | - | 3 | - | 3 | 1 | 2 | 1 | 3 | 4 | |
| ------------------------------------------------------------------------------CATTGCCAGGGATTACCAC------------------------------------ | 19 | 2 | 2 | 2 | - | - | - | 3 | 3 | 3 | 1 | |
| -------------------------------------GGGTTCCTGGCATGCTGATT---------------------------------------------------------------------------- | 20 | 3 | - | 4 | - | 2 | - | 1 | - | - | 3 | |
| ------------------------------------------------------------------------------CATTGCCAGGGATTACCA------------------------------------- | 18 | 2 | - | 1 | - | - | - | - | - | - | - | |
| ------------------------------------TGGGTTCCTGGCATGCTGA------------------------------------------------------------------------------ | 19 | 2 | - | - | - | - | - | - | - | - | - | |
| -------------------------------------GGGTTCCTGGCATGCTGATTTGT------------------------------------------------------------------------- | 23 | 2 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------CACATTGCCAGGGATTACCACGC---------------------------------- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------TTGGGTTCCTGGCATGCTGATTT--------------------------------------------------------------------------- | 23 | - | - | 1 | - | - | - | - | - | - | - | |
| -------------------------------------GGGTTCCTGGCATGCTGATTTGTGAC---------------------------------------------------------------------- | 26 | - | - | - | - | 1 | - | - | - | - | - | |
| -------------------------------------GGGTTCCTGGCATGCTGATTTGTG------------------------------------------------------------------------ | 24 | - | - | - | - | 1 | - | - | - | - | - | |
| ------------------------------------TGGGTTCCTGGCATGCTGATTT--------------------------------------------------------------------------- | 22 | - | - | - | - | - | - | - | 1 | - | - | |
| --------------------------------------GGTTCCTGGCATGCTGATTTG-------------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | - | - | - | |
| ------------------------------------TGGGTTCCTGGCATGCTG------------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------------------CATTGCCAGGGATTACCACG----------------------------------- | 20 | - | - | - | - | - | - | 1 | - | - | - | |
| -----------------------------------------------------------------------------ACATTGCCAGGGATTACCACGC---------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------AAATCACATTGCCAGGGA------------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------------AAAATCACATTGCCAGGG-------------------------------------------- | 18 | - | - | - | 1 | - | - | - | - | - | - | |
| rat | -----------------CTCACCTGCTCTGGCTGCTTGGGTTCCTGGCATGCTGATTTGTGACTTGAGATTAAAATCACATTGCCAGGGATTACCACGCAACCATGACCTTGGC------------------- | |||||||||||
| human | CACGGGGTGGCGCTGCTCTCAGGTGCTCTGGCTGCTTGGGTTCCTGGCATGCTGATTTGTGACTTAAGATTAAAATCACATTGCCAGGGATTACCACGCAACCACGACCTTGGCTGCTCCTCCAGAAACCGTG | |||||||||||
| mouse | ------------------------------------TGGGTTCCTGGCATGCTGATTTGTGACTTGAGATTAAAATCACATTGCCAGGGATTACCA------------------------------------- | |||||||||||
| ***************************** ****************************** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053590 ENSRNOG00000035467 rno-mir-23b | |||||||||||
| rat | ....((.(.(((((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).))).)).)..)). | 1.000 -33.64 | ||||||||||
| human | (((((((.((.((.(((...((((....(((.(((.(((((((((((((((.((((((..............))))))))).)))))))))..))).))).)))..)))).))).)).)).)).....))))) | 0.997 -51.54 | ||||||||||
| mouse | .((((((((((((((.((((((..............))))))))).)))))))))..)). | 0.999 -21.94 | ||||||||||
| rat | chromosome:17:7351688:7351784:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000053590|ENSRNOG00000035467 ## Same_strand|Exonic_non-coding|ENSRNOT00000053590|ENSRNOG00000035467 ## ENSRNOG00000035467|miRNA|rno-mir-23b|rno-mir-23b [Source:miRBase;Acc:MI0000853] ## {MIR: rno-mir-23b} |
| human | chromosome:9:96887294:96887426:1 | Same_strand|Intronic_non-coding|ENST00000395357|ENSG00000148120|protein_coding|Aminopeptidase O (AP-O)(EC 3.4.11.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8N6M6] ## Same_strand|Boundary_non-coding|ENST00000395356|ENSG00000148120|protein_coding|Aminopeptidase O (AP-O)(EC 3.4.11.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8N6M6] ## {SimpF: rank = 1 -1 FirstEF} ## {MIR: hsa-mir-23b} |
| mouse | chromosome:13:63401760:63401896:1 | Same_strand|Intronic_coding|ENSMUST00000060660|ENSMUSG00000056199|protein_coding| ## Same_strand|Intronic_non-coding|ENSMUST00000021911|ENSMUSG00000021458|protein_coding|RIKEN cDNA 2010111I01 gene Gene [Source:MGI Symbol;Acc:MGI:1919311] ## Same_strand|Boundary_non-coding|ENSMUST00000091560|ENSMUSG00000021458|protein_coding|RIKEN cDNA 2010111I01 gene Gene [Source:MGI Symbol;Acc:MGI:1919311] ## {MIR: mmu-mir-23b} |
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