rno-mir-24-1-as
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-24-1-as 5arm | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0.500 |
| rno-mir-24-1-as 3arm | 1 | 6 | 2 | 3 | 39 | 25 | 1 | 3 | 3 | 14 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-24-1-as 5arm | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0.000 |
| rno-mir-24-1-as 3arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | 0.001 |
sblock5243 (Antisense miRBase rno-mir-24-1-as) [miRBaseNonMapped_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseAS rno-mir-24-1-as | 0.003 | no | no | 0.44/0.58 | 18/23/0.78 | 1.0 0.0 | 0.3 1.5 | 3 44 | 0 0 | 2 10 | 0 0 | 25 31 | 1 3 | 5arm 3arm | 2 2 | nd nd | 0.16 0.27 | 2 3 | 100 | 10 | 2 | 4 |
| Member of family miR-370 (seed CCUGCUG): rno-mir-370, rno-mir-24-1, rno-mir-24-2, block638635_cand |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------------------------------AUAUCAG--------------------------------------------- | 85 | novel | |||||||||
| seed | ----------------------------------------------------------------GAUAUCA---------------------------------------------- | 9 | novel | |||||||||
| seed | ------------------------------------------------------------------UAUCAGC-------------------------------------------- | 3 | novel | |||||||||
| seed | --------------------------GUUCCUG------------------------------------------------------------------------------------ | 2 | novel | |||||||||
| seed | -----------------------------CCUGCUG--------------------------------------------------------------------------------- | 1 | miR-370 | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------GATATCAGCTCAGTAGGCACCG------------------------------- | 22 | - | 3 | 1 | - | 16 | 2 | - | 2 | 1 | 4 | |
| ----------------------------------------------------------------GATATCAGCTCAGTAGGCAC--------------------------------- | 20 | 1 | 1 | 1 | 2 | 7 | 8 | - | - | 1 | 4 | |
| ----------------------------------------------------------------GATATCAGCTCAGTAGGCACC-------------------------------- | 21 | - | - | - | - | 4 | 6 | - | 1 | - | 1 | |
| ----------------------------------------------------------------GATATCAGCTCAGTAGGC----------------------------------- | 18 | - | - | - | - | 7 | - | 1 | - | - | 3 | |
| ----------------------------------------------------------------GATATCAGCTCAGTAGGCA---------------------------------- | 19 | - | - | - | - | 3 | 2 | - | - | - | 1 | |
| -------------------------TGTTCCTGCTGAACTGAGCCA----------------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | 1 | |
| ---------------------------------------------------------------TGATATCAGCTCAGTAGG------------------------------------ | 18 | - | - | - | - | - | 2 | - | - | - | - | |
| ---------------------------------------------------------------TGATATCAGCTCAGTAGGCACC-------------------------------- | 22 | - | - | - | - | - | 2 | - | - | - | - | |
| ---------------------------------------------------------------TGATATCAGCTCAGTAGGCAC--------------------------------- | 21 | - | - | - | - | - | 1 | - | - | - | 1 | |
| ---------------------------------------------------------------TGATATCAGCTCAGTAGGC----------------------------------- | 19 | - | 1 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------GATATCAGCTCAGTAGGCACCGG------------------------------ | 23 | - | 1 | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------ATATCAGCTCAGTAGGCACCG------------------------------- | 21 | - | - | - | - | - | 2 | - | - | - | - | |
| -----------------------------------------------------------------ATATCAGCTCAGTAGGCACC-------------------------------- | 20 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------TCCTGCTGAACTGAGCCAG---------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------TGATATCAGCTCAGTAGGCA---------------------------------- | 20 | - | - | - | 1 | - | - | - | - | - | - | |
| rat | GCTTTTTGCTCAAGGGCTCGACTCCTGTTCCTGCTGAACTGAGCCAGTGTGTGAAATGAGAACTGATATCAGCTCAGTAGGCACCGGAGGGCGGGTCCAATCACAGCTGGGCAGTGC | |||||||||||
| human | -------------GGGCTCGACTCCTGTTCCTGCTGAACTGAGCCAGTGTGTAAAATGAGAACTGATATCAGCTCAGTAGGCACCGGAGGGCGGGTCCAATC-------GACAGCCC | |||||||||||
| mouse | ------TGCTCAAGGGCTCGACTCCTGTTCCTGCTGAACTGAGCCAGTGTGTGAAATGAGAACTGATATCAGCTCAGTAGGCACCGGAGGGCGGGTCC------------------- | |||||||||||
| *************************************** ********************************************* | ||||||||||||
| ..........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................................. | ENSRNOT00000053691 ENSRNOG00000035568 rno-mir-24-1 | |||||||||||
| rat | ((...(((((((.(((((((.((((.((.((((((((.((((..((((.............))))...)))).)))))))).)).))))..))))))).........))))))).)) | 0.970 -48.52 | ||||||||||
| human | (((((((.((((.((.((((((((.((((..((((.............))))...)))).)))))))).)).))))..))))))).... ........ | 0.990 -43.22 | ||||||||||
| mouse | .......(((((((.((((.((.((((((((.((((..((((.............))))...)))).)))))))).)).))))..))))))) | 1.000 -41.72 | ||||||||||
| rat | chromosome:17:7350950:7351066:1 | Opposite_strand|Exonic_non-coding|ENSRNOT00000053691|ENSRNOG00000035568 ## ENSRNOG00000035568|miRNA|rno-mir-24-1|rno-mir-24-1 [Source:miRBase;Acc:MI0000854] ## {ASMIR: rno-mir-24-1-as} |
| human | chromosome:9:96888103:96888199:-1 | Opposite_strand|Intronic_non-coding|ENST00000395357|ENSG00000148120|protein_coding|Aminopeptidase O (AP-O)(EC 3.4.11.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8N6M6] ## Opposite_strand|Boundary_non-coding|ENST00000395356|ENSG00000148120|protein_coding|Aminopeptidase O (AP-O)(EC 3.4.11.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8N6M6] ## {ASMIR: hsa-mir-24-1-as} |
| mouse | chromosome:13:63402507:63402598:-1 | Opposite_strand|Intronic_coding|ENSMUST00000060660|ENSMUSG00000056199|protein_coding| ## Opposite_strand|Intronic_non-coding|ENSMUST00000021911|ENSMUSG00000021458|protein_coding|RIKEN cDNA 2010111I01 gene Gene [Source:MGI Symbol;Acc:MGI:1919311] ## Opposite_strand|Boundary_non-coding|ENSMUST00000091560|ENSMUSG00000021458|protein_coding|RIKEN cDNA 2010111I01 gene Gene [Source:MGI Symbol;Acc:MGI:1919311] ## {ASMIR: mmu-mir-24-1-as} |
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