Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

rno-mir-24-2-as

rno-mir-24-2-as

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-24-2-as 5arm	0	0	0	0	1	0	0	0	0	0.500
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-24-2-as 5arm	0	0	0	0	0.000	0	0	0	0	0.000

rno-mir-24-2-as relative cloning frequencies

block804731 (Antisense miRBase rno-mir-24-2-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseAS rno-mir-24-2-as	0.001	no	no	0.52/0.58	19/21/0.67	1.0	0.3	3	0	2	0	28	1	5arm	2	nd	0.16	2	3	2	na	na

Families
Member of family miR-370 (seed CCUGCUG): rno-mir-370, rno-mir-24-1, rno-mir-24-2, block638635_cand

block804731 hairpin

		reads	miRBase family seed
seed	-------------------------------------GUUCCUG-----------------------------------------------------------------------------------------	2	novel
seed	----------------------------------------CCUGCUG--------------------------------------------------------------------------------------	1	miR-370
		len	cloning frequencies
			T3S1	T5S2
	------------------------------------TGTTCCTGCTGAACTGAGCCA----------------------------------------------------------------------------	21	1	1
	---------------------------------------TCCTGCTGAACTGAGCCAG---------------------------------------------------------------------------	19	1	-
rat	--------TTGCCAGCTCCTATGGGGGCTGGACTCCTGTTCCTGCTGAACTGAGCCAGTGCACTGGAATCAAC--TGTTTCAGCTCAGTAGGCACAGGAGGCGGAGCCCAGGGAG---AGGCAG---------
human	GGCAGGGGCTGCAGGCTCC-AAGGGGGCTTGACCCCTGTTCCTGCTGAACTGAGCCAGTGTACACAAACCAACTGTGTTTCAGCTCAGTAGGCACGGGAGGCAGAGCCCAGGGAGGCCAGGCAGCAGGATGGC
mouse	------------------------------------TGTTCCTGCTGAACTGAGCCAGTGCACTGGAATCAAC--TGTTTCAGCTCAGTAGGCACG-------------------------------------
	********************** ******************
	..... .<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<.. .....	ENSRNOT00000053624 ENSRNOG00000035501 rno-mir-24-2
rat	.((((..(((((.((((..(((..(((((((.((((((((.((((..((((............)) ))..)))).)))))))).))))))).)))..))))))))) .)))).	1.000 -60.20
human	..((...(((((.(((((( ....((((((..(((((((.((((((((.((((((((((............)))).))).))).)))))))).))))).))..))))))..)))).))..)))))....))..	1.000 -65.90
mouse	.((.((((((((.((((..((((............)) ))..)))).)))))))).)).	0.999 -24.40

rat	chromosome:19:25638429:25638539:1	Opposite_strand\|Exonic_non-coding\|ENSRNOT00000053624\|ENSRNOG00000035501 ## ENSRNOG00000035501\|miRNA\|rno-mir-24-2\|rno-mir-24-2 [Source:miRBase;Acc:MI0000855] ## {ASMIR: rno-mir-24-2-as}
human	chromosome:19:13808069:13808200:1	Opposite_strand\|Boundary_non-coding\|ENST00000386972\|ENSG00000209707\|miRNA\|hsa-mir-24-2 [Source:miRBase;Acc:MI0000081] ## {Repeats: dust 0 class=dust} ## {ASMIR: hsa-mir-24-2-as}
mouse	chromosome:8:86732692:86732842:-1	Opposite_strand\|Boundary_non-coding\|ENSMUST00000083607\|ENSMUSG00000065541\|miRNA\|mmu-mir-24-2 [Source:miRBase;Acc:MI0000572] ## {ASMIR: mmu-mir-24-2-as}

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