miR-Intess: rno-mir-24

rno-mir-24

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-24 5arm	1169	934	486	579	1688	1320	2008	3510	1570	1613
rno-mir-24 3arm	163316.500	117469	71756	59069	108373	64886	177805	285232	147188	104729
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-24 5arm	0.039	0.041	0.026	0.034	0.082	0.100	0.156	0.185	0.104	0.107
rno-mir-24 3arm	5.428	5.127	3.886	3.503	5.278	4.918	13.829	15.010	9.704	6.968

sblock4979 (miRBase rno-mir-24-1) [miRNAknown_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-24-1	0.004	no	no	0.44/0.61	18/25/0.76	0.0 0.0	0.0 0.3	548 674058	0 0	10 10	0 0	5 3	5 2	5arm 3arm	1 2	nd nd	0.22 0.17	2 1	1300891	10	-2	2

Clusters
Located in cluster 27: rno-mir-24, rno-mir-27b, rno-mir-23b

Families
Member of family miR-24 (seed UGCCUAC): rno-mir-24, rno-mir-24

		reads	miRBase family seed
seed	------------------------------------------------------------GGCUCAG--------------------------------	1226335	miR-24
seed	-------------------------------------------------------------GCUCAGU-------------------------------	66865	novel
seed	--------------------------------------------------------------CUCAGUU------------------------------	5990	novel
seed	----------------------UGCCUAC----------------------------------------------------------------------	731	miR-24
seed	-----------------------------------------------------------UGGCUCA---------------------------------	504	novel
seed	---------------------GUGCCUA-----------------------------------------------------------------------	296	novel
seed	---------------------------------------------------------------UCAGUUC-----------------------------	74	novel
seed	----------------------------------------------------------------CAGUUCA----------------------------	50	novel
seed	-----------------------GCCUACU---------------------------------------------------------------------	44	novel
seed	-----------------------------------------------------------------AGUUCAG---------------------------	2	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-miR-24	-----------------------------------------------------------TGGCTCAGTTCAGCAGGAACAG------------------	22	93384	70918	36774	28985	56700	34074	95472	148917	86415	63460
	-----------------------------------------------------------TGGCTCAGTTCAGCAGGA----------------------	18	24076	15934	14937	13087	20820	14513	28434	58792	19616	13100
	-----------------------------------------------------------TGGCTCAGTTCAGCAGGAACA-------------------	21	15358	9926	5399	4108	8662	5547	15238	21717	12692	10395
	-----------------------------------------------------------TGGCTCAGTTCAGCAGGAAC--------------------	20	14988	9638	5953	5675	9002	4449	14625	19310	10785	7546
	-----------------------------------------------------------TGGCTCAGTTCAGCAGGAA---------------------	19	8841	5884	3857	3650	5500	2907	9311	15870	7128	5000
	------------------------------------------------------------GGCTCAGTTCAGCAGGAACAG------------------	21	3296	2611	2539	1743	4142	1969	8157	11483	6083	3069
	------------------------------------------------------------GGCTCAGTTCAGCAGGAAC--------------------	19	708	680	597	450	1102	413	2044	2860	1073	503
	-----------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGG-----------------	23	728	499	469	362	605	258	1127	1366	808	291
	------------------------------------------------------------GGCTCAGTTCAGCAGGAACA-------------------	20	386	306	284	220	473	208	930	1408	641	452
	------------------------------------------------------------GGCTCAGTTCAGCAGGAA---------------------	18	347	288	233	187	468	147	839	1362	432	218
	-------------------------------------------------------------GCTCAGTTCAGCAGGAACAG------------------	20	434	293	322	276	290	145	568	747	512	305
	-----------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGGA----------------	24	204	129	81	73	121	34	224	308	255	119
	------------------------------------------------------------GGCTCAGTTCAGCAGGAACAGG-----------------	22	80	66	56	35	129	34	175	287	168	32
	-----------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGGAG---------------	25	107	32	53	66	68	26	152	275	113	13
	-------------------------------------------------------------GCTCAGTTCAGCAGGAAC--------------------	18	73	61	45	38	55	30	118	119	60	53
	-------------------------------------------------------------GCTCAGTTCAGCAGGAACA-------------------	19	76	52	51	32	48	21	141	113	63	45
	---------------------GTGCCTACTGAGCTGATA------------------------------------------------------------	18	94	48	13	15	68	56	39	107	67	69
	-------------------------------------------------------------GCTCAGTTCAGCAGGAACAGG-----------------	21	91	60	46	21	30	17	88	84	91	23
	------------------------------------------------------------GGCTCAGTTCAGCAGGAACAGGA----------------	23	33	15	13	18	89	29	38	67	137	10
	-------------------------------------------------------------GCTCAGTTCAGCAGGAACAGGA----------------	22	35	28	25	13	8	-	41	31	36	23
	----------------------------------------------------------CTGGCTCAGTTCAGCAGGAACAG------------------	23	22	12	7	1	9	16	15	33	17	23
	----------------------------------------------------------CTGGCTCAGTTCAGCAGGAACA-------------------	22	15	13	5	6	19	12	11	10	14	11
	--------------------GGTGCCTACTGAGCTGATATCA---------------------------------------------------------	22	24	3	5	6	3	1	10	25	5	24
	---------------------GTGCCTACTGAGCTGATATC----------------------------------------------------------	20	30	7	8	4	5	5	5	16	6	20
	--------------------GGTGCCTACTGAGCTGATA------------------------------------------------------------	19	13	10	3	4	6	2	10	15	3	14
	----------------------------------------------------------CTGGCTCAGTTCAGCAGGAAC--------------------	21	12	2	1	4	5	12	10	9	11	5
	--------------------GGTGCCTACTGAGCTGATATC----------------------------------------------------------	21	14	4	3	3	6	-	5	10	6	13
	----------------------------------------------------------CTGGCTCAGTTCAGCAGGA----------------------	19	7	3	1	7	4	6	5	10	8	12
	--------------------------------------------------------------CTCAGTTCAGCAGGAACAG------------------	19	2	2	3	3	4	4	9	18	13	4
	----------------------------------------------------------CTGGCTCAGTTCAGCAGG-----------------------	18	5	6	2	1	7	5	10	6	11	6
	---------------------------------------------------------------TCAGTTCAGCAGGAACAG------------------	18	5	5	1	4	3	4	10	14	-	4
	---------------------GTGCCTACTGAGCTGATATCA---------------------------------------------------------	21	7	3	2	1	2	2	1	7	2	12
	--------------------GGTGCCTACTGAGCTGAT-------------------------------------------------------------	18	6	10	-	3	-	2	6	7	2	3
	----------------------------------------------------------CTGGCTCAGTTCAGCAGGAA---------------------	20	-	2	2	1	6	4	6	10	2	4
	----------------------TGCCTACTGAGCTGATATCA---------------------------------------------------------	20	5	1	1	2	1	2	2	6	1	3
	----------------------TGCCTACTGAGCTGATATC----------------------------------------------------------	19	1	2	2	-	-	-	1	3	2	3
	-------------------------------------------------------------GCTCAGTTCAGCAGGAACAGGAG---------------	23	1	-	-	-	1	-	2	4	2	3
	--------------------------------------------------------------CTCAGTTCAGCAGGAACA-------------------	18	1	2	-	1	1	1	2	2	1	-
	--------------------GGTGCCTACTGAGCTGATAT-----------------------------------------------------------	20	-	-	-	1	-	-	2	2	1	-
	---------------------GTGCCTACTGAGCTGATAT-----------------------------------------------------------	19	1	-	-	-	-	-	2	1	1	1
	---------------------GTGCCTACTGAGCTGATATCAGT-------------------------------------------------------	23	-	1	-	-	1	-	-	1	1	-
	----------------------------------------------------------CTGGCTCAGTTCAGCAGGAACAGG-----------------	24	-	1	-	-	1	1	-	-	-	-
	------------------------------------------------------------GGCTCAGTTCAGCAGGAACAGGAG---------------	24	-	-	-	-	-	-	3	-	-	-
	----------------------TGCCTACTGAGCTGATAT-----------------------------------------------------------	18	-	1	-	1	-	-	-	-	1	-
	----------------------TGCCTACTGAGCTGATATCAG--------------------------------------------------------	21	-	-	-	-	-	-	1	-	-	1
	----------------------------------------------------------------CAGTTCAGCAGGAACAGG-----------------	18	-	-	-	1	1	-	-	-	-	-
	----------------------TGCCTACTGAGCTGATATCAGT-------------------------------------------------------	22	-	-	-	-	-	-	-	1	-	-
	--------------------GGTGCCTACTGAGCTGATATCAGT-------------------------------------------------------	24	-	-	-	1	-	-	-	-	-	-
	--------------------------------------------------------------CTCAGTTCAGCAGGAACAGGAG---------------	22	-	-	-	1	-	-	-	-	-	-
rno-miR-24-1*	---------------------GTGCCTACTGAGCTGATATCAG--------------------------------------------------------	22	-	-	-	-	-	-	-	-	-	-
rat	----------------CTCCGGTGCCTACTGAGCTGATATCAGTTCTCATTTCACACACTGGCTCAGTTCAGCAGGAACAGGAG---------------
human	-------------------CGGTGCCTACTGAGCTGATATCAGTTCTCATTTTACACACTGGCTCAGTTCAGCAGGAACAG------------------
mouse	TGTGATTGGACCCGCCCTCCGGTGCCTACTGAGCTGATATCAGTTCTCATTTCACACACTGGCTCAGTTCAGCAGGAACAGGAGTCGAGCCCTTGAGCA
	******************************* **************************
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000053691 ENSRNOG00000035568 rno-mir-24-1
rat	((((.((.(((.(((((((((..(((((.............))))).))))))))).))).)).))))	1.000 -26.32
human	..((.(((.(((((((((..(((((.............))))).))))))))).))).))..	1.000 -20.62
mouse	.((....((...((..((((.((.(((.(((((((((..(((((.............))))).))))))))).))).)).)))).))...))....)).	0.942 -30.82

rat	chromosome:17:7350971:7351038:-1	Same_strand\|Exonic_non-coding\|ENSRNOT00000053691\|ENSRNOG00000035568 ## Same_strand\|Boundary_non-coding\|ENSRNOT00000053691\|ENSRNOG00000035568 ## ENSRNOG00000035568\|miRNA\|rno-mir-24-1\|rno-mir-24-1 [Source:miRBase;Acc:MI0000854] ## {MIR: rno-mir-24-1}
human	chromosome:9:96888104:96888211:1	Same_strand\|Intronic_non-coding\|ENST00000395357\|ENSG00000148120\|protein_coding\|Aminopeptidase O (AP-O)(EC 3.4.11.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8N6M6] ## Same_strand\|Boundary_non-coding\|ENST00000395356\|ENSG00000148120\|protein_coding\|Aminopeptidase O (AP-O)(EC 3.4.11.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8N6M6] ## {MIR: hsa-mir-24-1}
mouse	chromosome:13:63402500:63402598:1	Same_strand\|Intronic_coding\|ENSMUST00000060660\|ENSMUSG00000056199\|protein_coding\| ## Same_strand\|Intronic_non-coding\|ENSMUST00000021911\|ENSMUSG00000021458\|protein_coding\|RIKEN cDNA 2010111I01 gene Gene [Source:MGI Symbol;Acc:MGI:1919311] ## Same_strand\|Boundary_non-coding\|ENSMUST00000091560\|ENSMUSG00000021458\|protein_coding\|RIKEN cDNA 2010111I01 gene Gene [Source:MGI Symbol;Acc:MGI:1919311] ## {MIR: mmu-mir-24-1}

sblock5754 (miRBase rno-mir-24-2) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-24-2	0.001	no	no	0.45/0.79	18/25/0.76	2.3 0.0 0.0 3.5	1.0 0.0 0.3 0.5	10 6815 674058 2	0 0 0 0	5 10 10 2	0 0 0 0	1 24 26 1	25 5 6 28	5arm 5arm 3arm 3arm	1 1 2 2	nd nd nd nd	0.29 0.19 0.18 0.42	4 2 2 5	1313631	10	1	2

Clusters
Located in cluster 39: rno-mir-24, rno-mir-27a, rno-mir-23a

Families
Member of family miR-24 (seed UGCCUAC): rno-mir-24, rno-mir-24

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------GGCUCAG-----------------------------------------------------------	1226335	miR-24
seed	--------------------------------------------------------------------------------GCUCAGU----------------------------------------------------------	66865	novel
seed	----------------------------------------UGCCUAC--------------------------------------------------------------------------------------------------	13439	miR-24
seed	---------------------------------------------------------------------------------CUCAGUU---------------------------------------------------------	5993	novel
seed	------------------------------------------------------------------------------UGGCUCA------------------------------------------------------------	504	novel
seed	-----------------------------------------GCCUACU-------------------------------------------------------------------------------------------------	187	novel
seed	---------------------------------------GUGCCUA---------------------------------------------------------------------------------------------------	166	novel
seed	----------------------------------------------------------------------------------UCAGUUC--------------------------------------------------------	74	novel
seed	-----------------------------------------------------------------------------------CAGUUCA-------------------------------------------------------	50	novel
seed	------------------------------------------CCUACUG------------------------------------------------------------------------------------------------	4	novel
seed	--------------------UCCCUGG----------------------------------------------------------------------------------------------------------------------	4	novel
seed	---------------------CCCUGGG---------------------------------------------------------------------------------------------------------------------	2	novel
seed	-----------------CUCUCCC-------------------------------------------------------------------------------------------------------------------------	2	novel
seed	------------------------------------------------------------------------------------AGUUCAG------------------------------------------------------	2	novel
seed	-----------------------------------------------------------------------------------------------------AGUCCAG-------------------------------------	1	novel
seed	------------------------------------------------------------------------------------------------------------CCCCCAU------------------------------	1	novel
seed	-------------------CUCCCUG-----------------------------------------------------------------------------------------------------------------------	1	novel
seed	------------------UCUCCCU------------------------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-miR-24	------------------------------------------------------------------------------TGGCTCAGTTCAGCAGGAACAG---------------------------------------------	22	93384	70918	36774	28985	56700	34074	95472	148917	86415	63460
	------------------------------------------------------------------------------TGGCTCAGTTCAGCAGGA-------------------------------------------------	18	24076	15934	14937	13087	20820	14513	28434	58792	19616	13100
	------------------------------------------------------------------------------TGGCTCAGTTCAGCAGGAACA----------------------------------------------	21	15358	9926	5399	4108	8662	5547	15238	21717	12692	10395
	------------------------------------------------------------------------------TGGCTCAGTTCAGCAGGAAC-----------------------------------------------	20	14988	9638	5953	5675	9002	4449	14625	19310	10785	7546
	------------------------------------------------------------------------------TGGCTCAGTTCAGCAGGAA------------------------------------------------	19	8841	5884	3857	3650	5500	2907	9311	15870	7128	5000
	-------------------------------------------------------------------------------GGCTCAGTTCAGCAGGAACAG---------------------------------------------	21	3296	2611	2539	1743	4142	1969	8157	11483	6083	3069
	-------------------------------------------------------------------------------GGCTCAGTTCAGCAGGAAC-----------------------------------------------	19	708	680	597	450	1102	413	2044	2860	1073	503
	---------------------------------------GTGCCTACTGAGCTGA-AACAG------------------------------------------------------------------------------------	21	523	485	320	345	941	707	1215	2114	895	943
	------------------------------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGG--------------------------------------------	23	728	499	469	362	605	258	1127	1366	808	291
	-------------------------------------------------------------------------------GGCTCAGTTCAGCAGGAACA----------------------------------------------	20	386	306	284	220	473	208	930	1408	641	452
	-------------------------------------------------------------------------------GGCTCAGTTCAGCAGGAA------------------------------------------------	18	347	288	233	187	468	147	839	1362	432	218
	--------------------------------------------------------------------------------GCTCAGTTCAGCAGGAACAG---------------------------------------------	20	434	293	322	276	290	145	568	747	512	305
rno-miR-24-2*	---------------------------------------GTGCCTACTGAGCTGA-AACAGT-----------------------------------------------------------------------------------	22	242	189	66	68	284	282	337	513	286	179
	------------------------------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGGA-------------------------------------------	24	204	129	81	73	121	34	224	308	255	119
	-------------------------------------------------------------------------------GGCTCAGTTCAGCAGGAACAGG--------------------------------------------	22	80	66	56	35	129	34	175	287	168	32
	---------------------------------------GTGCCTACTGAGCTGA-AACA-------------------------------------------------------------------------------------	20	76	59	24	36	137	83	133	245	122	137
	---------------------------------------GTGCCTACTGAGCTGA-AAC--------------------------------------------------------------------------------------	19	69	55	29	67	128	77	157	276	101	83
	------------------------------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGGAG------------------------------------------	25	107	32	53	66	68	26	152	275	113	13
	--------------------------------------------------------------------------------GCTCAGTTCAGCAGGAAC-----------------------------------------------	18	73	61	45	38	55	30	118	119	60	53
	--------------------------------------------------------------------------------GCTCAGTTCAGCAGGAACA----------------------------------------------	19	76	52	51	32	48	21	141	113	63	45
	--------------------------------------------------------------------------------GCTCAGTTCAGCAGGAACAGG--------------------------------------------	21	91	60	46	21	30	17	88	84	91	23
	-------------------------------------------------------------------------------GGCTCAGTTCAGCAGGAACAGGA-------------------------------------------	23	33	15	13	18	89	29	38	67	137	10
	---------------------------------------GTGCCTACTGAGCTGA-AA---------------------------------------------------------------------------------------	18	26	25	4	9	33	34	26	72	22	31
	--------------------------------------------------------------------------------GCTCAGTTCAGCAGGAACAGGA-------------------------------------------	22	35	28	25	13	8	-	41	31	36	23
	-----------------------------------------------------------------------------CTGGCTCAGTTCAGCAGGAACAG---------------------------------------------	23	22	12	7	1	9	16	15	33	17	23
	-----------------------------------------------------------------------------CTGGCTCAGTTCAGCAGGAACA----------------------------------------------	22	15	13	5	6	19	12	11	10	14	11
	---------------------------------------GTGCCTACTGAGCTGA-AACAGT--T--------------------------------------------------------------------------------	23	9	6	-	4	17	22	9	23	11	13
	--------------------------------------TGTGCCTACTGAGCTGA-AACAG------------------------------------------------------------------------------------	22	9	8	-	-	13	11	6	10	11	18
	-----------------------------------------------------------------------------CTGGCTCAGTTCAGCAGGAAC-----------------------------------------------	21	12	2	1	4	5	12	10	9	11	5
	-----------------------------------------------------------------------------CTGGCTCAGTTCAGCAGGA-------------------------------------------------	19	7	3	1	7	4	6	5	10	8	12
	---------------------------------------------------------------------------------CTCAGTTCAGCAGGAACAG---------------------------------------------	19	2	2	3	3	4	4	9	18	13	4
	-----------------------------------------------------------------------------CTGGCTCAGTTCAGCAGG--------------------------------------------------	18	5	6	2	1	7	5	10	6	11	6
	----------------------------------------TGCCTACTGAGCTGA-AACAGT-----------------------------------------------------------------------------------	21	5	6	-	4	11	6	5	9	3	5
	----------------------------------------TGCCTACTGAGCTGA-AACAG------------------------------------------------------------------------------------	20	-	6	1	1	4	7	4	14	8	6
	----------------------------------------------------------------------------------TCAGTTCAGCAGGAACAG---------------------------------------------	18	5	5	1	4	3	4	10	14	-	4
	--------------------------------------TGTGCCTACTGAGCTGA-AACA-------------------------------------------------------------------------------------	21	1	2	1	-	4	6	10	9	-	5
	-----------------------------------------------------------------------------CTGGCTCAGTTCAGCAGGAA------------------------------------------------	20	-	2	2	1	6	4	6	10	2	4
	----------------------------------------TGCCTACTGAGCTGA-AACA-------------------------------------------------------------------------------------	19	2	3	-	-	9	4	3	3	2	6
	----------------------------------------TGCCTACTGAGCTGA-AAC--------------------------------------------------------------------------------------	18	3	-	1	3	7	1	3	7	1	1
	----------------------------------------TGCCTACTGAGCTGA-AACAGT--T--------------------------------------------------------------------------------	22	2	-	-	-	1	6	2	2	-	9
	--------------------------------------TGTGCCTACTGAGCTGA-A----------------------------------------------------------------------------------------	18	-	-	1	1	3	1	2	4	-	3
	--------------------------------------TGTGCCTACTGAGCTGA-AAC--------------------------------------------------------------------------------------	20	5	-	-	-	-	1	4	1	2	1
	--------------------------------------------------------------------------------GCTCAGTTCAGCAGGAACAGGAG------------------------------------------	23	1	-	-	-	1	-	2	4	2	3
	---------------------------------------------------------------------------------CTCAGTTCAGCAGGAACA----------------------------------------------	18	1	2	-	1	1	1	2	2	1	-
	--------------------------------------TGTGCCTACTGAGCTGA-AACAGT-----------------------------------------------------------------------------------	23	-	-	-	-	2	2	-	1	2	2
	---------------------------------------GTGCCTACTGAGCTGA-AACAGT--TG-------------------------------------------------------------------------------	24	-	-	-	-	-	-	4	2	1	1
	---------------------------------------GTGCCTACTGAGCTGA-AACAGT--TGA------------------------------------------------------------------------------	25	2	-	-	-	1	-	-	1	2	1
	--------------------------------------TGTGCCTACTGAGCTGA-AA---------------------------------------------------------------------------------------	19	-	-	-	-	-	-	2	2	-	-
	--------------------------------------------------------------------------------GCTCAGTTCAGCAGGAACAGGAGTC----------------------------------------	25	1	2	-	-	-	-	-	-	-	-
	-----------------------------------------------------------------------------CTGGCTCAGTTCAGCAGGAACAGG--------------------------------------------	24	-	1	-	-	1	1	-	-	-	-
	-------------------CTCCCTGGGCTCCGCCTCCT----------------------------------------------------------------------------------------------------------	20	-	-	-	-	-	-	-	1	-	2
	-------------------------------------------------------------------------------GGCTCAGTTCAGCAGGAACAGGAG------------------------------------------	24	-	-	-	-	-	-	3	-	-	-
	-----------------------------------------------------------------------------------CAGTTCAGCAGGAACAGG--------------------------------------------	18	-	-	-	1	1	-	-	-	-	-
	-----------------------------------------GCCTACTGAGCTGA-AACA-------------------------------------------------------------------------------------	18	-	-	-	-	-	-	-	-	2	-
	-----------------------------------------GCCTACTGAGCTGA-AACAG------------------------------------------------------------------------------------	19	-	-	-	-	-	-	1	-	-	1
	--------------------TCCCTGGGCTCCGCCTCCT----------------------------------------------------------------------------------------------------------	19	-	-	-	-	-	-	-	-	1	1
	----------------CCTCTCCCTGGGCTCCGCCTCCTG---------------------------------------------------------------------------------------------------------	24	-	-	2	-	-	-	-	-	-	-
	----------------------------------------TGCCTACTGAGCTGA-AACAGT--TGA------------------------------------------------------------------------------	24	-	-	-	-	1	-	-	-	-	-
	-----------------CTCTCCCTGGGCTCCGCCTCCT----------------------------------------------------------------------------------------------------------	22	-	-	-	-	-	-	-	-	-	1
	---------------------------------------------------------------------------------CTCAGTTCAGCAGGAACAGGAG------------------------------------------	22	-	-	-	1	-	-	-	-	-	-
	------------------TCTCCCTGGGCTCCGCCTCC-----------------------------------------------------------------------------------------------------------	20	-	-	-	-	-	-	1	-	-	-
	-----------------------------------------------------------------------------------------------------------GCCCCCATAGGAGCTGGC--------------------	18	1	-	-	-	-	-	-	-	-	-
	----------------------------------------------------------------------------------------------------GAGTCCAGCCCCCATAGGAGCTGG---------------------	24	-	-	-	-	-	-	-	-	1	-
	-------------------CTCCCTGGGCTCCGCCTCC-----------------------------------------------------------------------------------------------------------	19	-	-	-	-	-	-	-	-	-	1
rat	---------------GCCTCTCCCTGGGCTCCGCCTCCTGTGCCTACTGAGCTGA-AACAGT--TGATTCCAGTGCACTGGCTCAGTTCAGCAGGAACAGGAGTCCAGCCCCCATAGGAGCTGGCA-------------------
human	-------------------------------------CGGTGCCTACTGAGCTGATATCAGTTCTCATTTTA-CACACTGGCTCAGTTCAGCAGGAACAG---------------------------------------------
mouse	GGCTGGCAGGGCTCTGCCTCTCTCCGGGCTCCGCCTCCCGTGCCTACTGAGCTGA-AACAGT--TGATTCCAGTGCACTGGCTCAGTTCAGCAGGAACAGGAGTCCAGCCCCC-TAGGAGCTGGCAACCCTGCAGAATGTCTGCC
	* **************** * **** * *** * *************************
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000053624 ENSRNOG00000035501 rno-mir-24-2
rat	(((.((((..(((((....(((((((.(((.((((((((( ..(((( ..((....))..))))..))))))))).))).)))))))...))))).....))))..))).	1.000 -53.50
human	..((.(((.(((((((((..(((((.......... ...))))).))))))))).))).))..	1.000 -20.62
mouse	(((..((((((...((((...(((((((((....((((.((.(((.((((((((( ..(((( ..((....))..))))..))))))))).))).)).))))...))))).. ..))))..)))).)))))).....)))....	0.848 -63.40

rat	chromosome:19:25638430:25638537:-1	Same_strand\|Exonic_non-coding\|ENSRNOT00000053624\|ENSRNOG00000035501 ## ENSRNOG00000035501\|miRNA\|rno-mir-24-2\|rno-mir-24-2 [Source:miRBase;Acc:MI0000855] ## {MIR: rno-mir-24-2}
human	chromosome:9:96888087:96888234:1	Same_strand\|Intronic_non-coding\|ENST00000395357\|ENSG00000148120\|protein_coding\|Aminopeptidase O (AP-O)(EC 3.4.11.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8N6M6] ## Same_strand\|Boundary_non-coding\|ENST00000395356\|ENSG00000148120\|protein_coding\|Aminopeptidase O (AP-O)(EC 3.4.11.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8N6M6] ## {MIR: hsa-mir-24-1}
mouse	chromosome:8:86732699:86732839:1	Same_strand\|Boundary_non-coding\|ENSMUST00000083607\|ENSMUSG00000065541\|miRNA\|mmu-mir-24-2 [Source:miRBase;Acc:MI0000572] ## {MIR: mmu-mir-24-2}

miR-Intess™

rno-mir-24

sblock4979 (miRBase rno-mir-24-1) [miRNAknown_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK]

sblock5754 (miRBase rno-mir-24-2) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]