rno-mir-431
sblock10441 (miRBase rno-mir-431) [miRNAknown_lenNOK_cloningHIGH_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-431 | 0.040 | no | no | 0.47/0.68 | 18/26/0.59 | 0.0 1.0 0.0 0.0 0.1 0.0 | 1.0 0.5 0.0 0.0 2.3 0.2 | 402 2 1 1 365 8 | 0 0 0 0 0 0 | 9 1 1 1 7 2 | 0 0 0 0 0 0 | 19 33 39 46 60 83 | -22 -35 -40 -50 -67 -84 | loop loop loop loop loop loop | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.11 0.42 0.42 0.18 0.21 0.42 | 2 7 5 2 2 7 | 1075 | 9 | na | na |
| Located in cluster 66: rno-mir-431, rno-mir-433 |
| reads | miRBase family seed | ||||||||||
| seed | --------------------GUCUUGC--------------------------------------------------------------------------------------- | 515 | miR-431 | ||||||||
| seed | ---------------------------------------------------------------AGGUCGU-------------------------------------------- | 392 | novel | ||||||||
| seed | -------------------------------------------------------------GCAGGUC---------------------------------------------- | 85 | novel | ||||||||
| seed | ------------------------------------------------------------UGCAGGU----------------------------------------------- | 61 | novel | ||||||||
| seed | ------------------------------------------------------------------------------------CGCAAGA----------------------- | 9 | novel | ||||||||
| seed | ---------------------UCUUGCA-------------------------------------------------------------------------------------- | 6 | novel | ||||||||
| seed | ---------------------------------------------------------CGUUGCA-------------------------------------------------- | 1 | novel | ||||||||
| seed | ----------------------------------CAUGCAG------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ------------------------------------UGCAGGC----------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | -------------------UGUCUUG---------------------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | --------------------------------------------------------------CAGGUCG--------------------------------------------- | 1 | novel | ||||||||
| seed | -----------------------------------------------CUGACGG------------------------------------------------------------ | 1 | novel | ||||||||
| seed | ----------------------------------------GGCCACA------------------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| rno-miR-431 | -------------------TGTCTTGCAGGCCGTCATGCA-------------------------------------------------------------------------- | 21 | 118 | 97 | - | 4 | 6 | 2 | 1 | 1 | 6 |
| --------------------------------------------------------------CAGGTCGTCTTGCAGGGC---------------------------------- | 18 | 66 | 58 | - | 1 | - | - | - | - | - | |
| --------------------------------------------------------------CAGGTCGTCTTGCAGGGCTTCTC----------------------------- | 23 | 62 | 47 | - | - | - | 1 | 1 | - | - | |
| -------------------TGTCTTGCAGGCCGTCAT----------------------------------------------------------------------------- | 18 | 58 | 43 | 1 | 3 | - | 2 | - | - | 3 | |
| -------------------TGTCTTGCAGGCCGTCATGC--------------------------------------------------------------------------- | 20 | 42 | 44 | 1 | 1 | 10 | 1 | - | - | 2 | |
| --------------------------------------------------------------CAGGTCGTCTTGCAGGGCTTC------------------------------- | 21 | 41 | 36 | - | 1 | - | - | - | - | - | |
| -------------------TGTCTTGCAGGCCGTCATG---------------------------------------------------------------------------- | 19 | 34 | 21 | - | 1 | 4 | 2 | - | - | - | |
| --------------------------------------------------------------CAGGTCGTCTTGCAGGGCT--------------------------------- | 19 | 17 | 30 | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------TGCAGGTCGTCTTGCAGGG----------------------------------- | 19 | 25 | 5 | - | - | - | 1 | - | - | - | |
| -----------------------------------------------------------TTGCAGGTCGTCTTGCAGG------------------------------------ | 19 | 18 | 10 | - | - | - | - | - | - | - | |
| ------------------------------------------------------------TGCAGGTCGTCTTGCAGG------------------------------------ | 18 | 12 | 6 | - | - | - | - | - | - | - | |
| --------------------------------------------------------------CAGGTCGTCTTGCAGGGCTT-------------------------------- | 20 | 10 | 5 | 1 | - | - | - | - | - | - | |
| -----------------------------------------------------------TTGCAGGTCGTCTTGCAGGGC---------------------------------- | 21 | 11 | 4 | 1 | - | - | - | - | - | - | |
| ------------------------------------------------------------TGCAGGTCGTCTTGCAGGGC---------------------------------- | 20 | 5 | 10 | - | - | - | - | - | - | - | |
| --------------------------------------------------------------CAGGTCGTCTTGCAGGGCTTCT------------------------------ | 22 | 11 | 3 | - | - | - | - | - | - | - | |
| ------------------------------------------------------------TGCAGGTCGTCTTGCAGGGCT--------------------------------- | 21 | 3 | 3 | - | - | - | - | - | - | - | |
| -------------------TGTCTTGCAGGCCGTCATGCAG------------------------------------------------------------------------- | 22 | 2 | 3 | - | - | 1 | - | - | - | - | |
| -----------------------------------------------------------TTGCAGGTCGTCTTGCAGGGCT--------------------------------- | 22 | 4 | 2 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------------------TCGCAAGACGACATCTTCA------------ | 19 | 4 | 2 | - | - | - | - | - | - | - | |
| ------------------------------------------------------------TGCAGGTCGTCTTGCAGGGCTTC------------------------------- | 23 | 4 | 1 | - | - | - | - | - | - | - | |
| ------------------------------------------------------------TGCAGGTCGTCTTGCAGGGCTTCTC----------------------------- | 25 | 5 | - | - | - | - | - | - | - | - | |
| --------------------GTCTTGCAGGCCGTCATGCA-------------------------------------------------------------------------- | 20 | 2 | 2 | - | - | 1 | - | - | - | - | |
| -----------------------------------------------------------TTGCAGGTCGTCTTGCAGGGCTT-------------------------------- | 23 | 2 | 3 | - | - | - | - | - | - | - | |
| ------------------------------------------------------------TGCAGGTCGTCTTGCAGGGCTT-------------------------------- | 22 | 2 | 2 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------TTGCAGGTCGTCTTGCAG------------------------------------- | 18 | - | 3 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------TTGCAGGTCGTCTTGCAGGGCTTCTC----------------------------- | 26 | 2 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------------------TCGCAAGACGACATCTTC------------- | 18 | 2 | - | - | - | - | - | - | - | - | |
| -------------------TGTCTTGCAGGCCGTCATGCAGG------------------------------------------------------------------------ | 23 | - | 1 | - | - | - | - | - | - | - | |
| ------------------------------------------------------------TGCAGGTCGTCTTGCAGGGCTTCT------------------------------ | 24 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------TCATGCAGGCCACACTGAC-------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | |
| -------------------------------------------------------------GCAGGTCGTCTTGCAGGGC---------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------AGGCCACACTGACGGTAAC-------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | |
| --------------------------------------------------------ACGTTGCAGGTCGTCTTGCAG------------------------------------- | 21 | - | 1 | - | - | - | - | - | - | - | |
| -----------------------------------ATGCAGGCCACACTGACG------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------TTGCAGGTCGTCTTGCAGGG----------------------------------- | 20 | - | 1 | - | - | - | - | - | - | - | |
| --------------------GTCTTGCAGGCCGTCATG---------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | |
| ------------------GTGTCTTGCAGGCCGTCATGC--------------------------------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------ACTGACGGTAACGTTGCAGGTC---------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------------------TCGCAAGACGACATCTTCATC---------- | 21 | - | 1 | - | - | - | - | - | - | - | |
| rat | tcctgcgcgtcctgcgaggTGTCTTGCAGGCCGTCATGCAggccacactgacggtaacgttgCAGGTCGTCTTGCAGGGCTTCTCgcaagacgacatcttcatcgccaacgacg | ||||||||||
| ****************************************************************************************************************** | |||||||||||
| .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... | ENSRNOT00000054606 ENSRNOG00000036498 rno-mir-431 | ||||||||||
| rat | ..((((((((((((((((....))))))))((((((((.......)).))))))..))).)))))((((((((((..(....)..)))))))))).......(((....))).. | 1.000 -45.80 | |||||||||
| rat | chromosome:6:134182307:134182420:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054606|ENSRNOG00000036498 ## ENSRNOG00000036498|miRNA|rno-mir-431|rno-mir-431 [Source:miRBase;Acc:MI0001722] ## {MIR: rno-mir-431} |
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