sblock12792_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock12792_cand 5arm | 2 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock12792_cand 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock12792_cand 5arm | 0.000 | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock12792_cand 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 |
sblock12792 [novel_multiarm_DicerOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.41/0.63 | 19/22/0.83 | 0.0 0.0 | 0.6 0.0 | 5 1 | 0 0 | 3 1 | 0 0 | 3 1 | 3 12 | 5arm 3arm | 1 1 | 44 3 | 0.14 0.18 | 1 1 | 6 | 4 | 2 | 2 |
| reads | miRBase family seed | |||||
| seed | ----CUGGAGG-------------------------------------------------------- | 5 | novel | |||
| seed | ---------------------------------------------AUGUUUC--------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S2 | |||
| ---CCTGGAGGGTGGGAACCATAT------------------------------------------- | 21 | 2 | 1 | - | - | |
| ---CCTGGAGGGTGGGAACCAT--------------------------------------------- | 19 | - | 1 | - | - | |
| --------------------------------------------TATGTTTCCTTCCCTCTATTCC- | 22 | - | - | - | 1 | |
| ---CCTGGAGGGTGGGAACCATATT------------------------------------------ | 22 | - | - | 1 | - | |
| rat | ggaCCTGGAGGGTGGGAACCATATTagctcatgctgactaccaaTATGTTTCCTTCCCTCTATTCCt | |||||
| ******************************************************************* | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000059298 ENSRNOG00000024250 RGD1560666_predicted | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000029467 ENSRNOG00000024250 RGD1560666_predicted | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000059295 ENSRNOG00000024250 RGD1560666_predicted | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000042884 ENSRNOG00000024250 RGD1560666_predicted | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000029453 ENSRNOG00000024250 RGD1560666_predicted | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000059289 ENSRNOG00000024250 RGD1560666_predicted | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000059288 ENSRNOG00000024250 RGD1560666_predicted | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>> | ENSRNOT00000042773 ENSRNOG00000024250 RGD1560666_predicted | |||||
| rat | (((..(((((((.(((((.(((((((((....))))).......)))).))))).))))))).))). | 1.000 -27.01 | ||||
| rat | chromosome:X:44316243:44316309:1 | Same_strand|Intronic_coding|ENSRNOT00000042884|ENSRNOG00000024250 ## Same_strand|Boundary_non-coding|ENSRNOT00000059290|ENSRNOG00000024250 ## ENSRNOG00000024250|protein_coding|RGD1560666_predicted| |
©2008 InteRNA Genomics B.V.