sblock6133_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock6133_cand 5arm | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 |
| sblock6133_cand 3arm | 0 | 0 | 0 | 0 | 4 | 1 | 0 | 1 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock6133_cand 5arm | 0 | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 |
| sblock6133_cand 3arm | 0 | 0 | 0 | 0 | 0.000 | 0.000 | 0 | 0.000 | 0 | 0 |
sblock6133 [novel_lenNOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.52/0.60 | 18/23/0.44 | 0.0 0.0 | 2.0 1.2 | 3 6 | 0 0 | 1 3 | 0 0 | 14 17 | 2 3 | 5arm 3arm | 1 1 | nd nd | 0.05 0.05 | 1 1 | 9 | 3 | 1 | 2 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------CUGUCAA-------------------------------- | 6 | novel | ||
| seed | ---------------GCAGCUG---------------------------------------------------------------------------- | 3 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T4S2 | |||
| ----------------------------------------------------------ACTGTCAAGCTGCCAGCTGC-------------------- | 20 | 2 | - | - | |
| ----------------------------------------------------------ACTGTCAAGCTGCCAGCTG--------------------- | 19 | 1 | 1 | - | |
| --------------TGCAGCTGGTAGCTTGTG------------------------------------------------------------------ | 18 | - | 1 | - | |
| ----------------------------------------------------------ACTGTCAAGCTGCCAGCT---------------------- | 18 | - | - | 1 | |
| --------------TGCAGCTGGTAGCTTGTGC----------------------------------------------------------------- | 19 | - | 1 | - | |
| ----------------------------------------------------------ACTGTCAAGCTGCCAGCTGCTAT----------------- | 23 | 1 | - | - | |
| --------------TGCAGCTGGTAGCTTGTGCACTG------------------------------------------------------------- | 23 | - | 1 | - | |
| rat | GGTCCCTCTCTACCTGCAGCTGGTAGCTTGTGCACTGACAGTAGAACATGAGAAAGTCACTGTCAAGCTGCCAGCTGCTATTTAAAAGATAGTTACTA | ||||
| mouse | -------------CTGCCACTGGCAGCTTGCAGACTGATGGCAGAACATGAGAAAGTCACTGTCAAGTTGCCAGCTGCTA------------------ | ||||
| **** **** ****** ***** * ************************* ************ | |||||
| rat | (((..((.(((....(((((((((((((((.(((.((((................)))).))))))))))))))))))........))).))..))). | 0.940 -38.49 | |||
| mouse | ..((..((((((((((((((..((((..((.....)).....))))))).)))))))))))..)).. | 0.929 -26.40 | |||
| rat | chromosome:2:175823362:175823459:-1 | intergenic |
| mouse | chromosome:3:83872899:83873036:-1 | intergenic |
©2008 InteRNA Genomics B.V.