sblock649_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock649_cand 5arm | 8.286 | 4.857 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock649_cand 3arm | 74.667 | 85.537 | 0 | 0.111 | 0.200 | 0 | 0 | 0 | 0 | 0.111 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock649_cand 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock649_cand 3arm | 0.002 | 0.004 | 0 | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0.000 |
sblock649 [novel_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.43/0.53 | 18/23/0.63 | 0.0 0.5 0.0 | 1.3 1.0 1.4 | 58 2 882 | 0 0 0 | 2 1 5 | 0 0 0 | 8 14 5 | 6 -1 7 | 5arm 3arm 3arm | 7 8 9 | nd nd nd | 0.17 0.05 0.10 | 2 1 1 | 1175 | 5 | 1 | 2 |
| Member of family novel15 (seed GUAUAAC): sblock647_novel, sblock650_novel, sblock651_novel, sblock652_novel, sblock649_cand |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------------------------------------GUAUAAC---------------------------- | 1066 | novel | ||||
| seed | -----------------------GUCAGGC--------------------------------------------------------------------- | 79 | novel | ||||
| seed | -------------------------CAGGCUG------------------------------------------------------------------- | 12 | novel | ||||
| seed | -------------------------------------------------------------------UAACCAA------------------------- | 8 | novel | ||||
| seed | -----------------------------------------------------------------UAUAACC--------------------------- | 6 | novel | ||||
| seed | ---------------------------GGCUGCU----------------------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------GGUCCUG------------------------------------ | 1 | novel | ||||
| seed | ---------------------------------------------------------GUCCUGG----------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------------GGGUAUA------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T5S2 | |||
| ---------------------------------------------------------------GGTATAACCAAAGCCCGACTGA-------------- | 22 | 139 | 288 | - | 1 | - | |
| ---------------------------------------------------------------GGTATAACCAAAGCCCGAC----------------- | 19 | 193 | 131 | 1 | - | 1 | |
| ---------------------------------------------------------------GGTATAACCAAAGCCCGACT---------------- | 20 | 131 | 42 | - | - | - | |
| ---------------------------------------------------------------GGTATAACCAAAGCCCGACTG--------------- | 21 | 59 | 27 | - | - | - | |
| ---------------------------------------------------------------GGTATAACCAAAGCCCGA------------------ | 18 | 17 | 19 | - | - | - | |
| ----------------------AGTCAGGCTGCTGGTTATA---------------------------------------------------------- | 19 | 17 | 15 | - | - | - | |
| ----------------------AGTCAGGCTGCTGGTTAT----------------------------------------------------------- | 18 | 17 | 3 | - | - | - | |
| ---------------------------------------------------------------GGTATAACCAAAGCCCGACTGAA------------- | 23 | 7 | 10 | - | - | - | |
| ----------------------AGTCAGGCTGCTGGTTATATTCC------------------------------------------------------ | 23 | 9 | 5 | - | - | - | |
| ----------------------AGTCAGGCTGCTGGTTATATTC------------------------------------------------------- | 22 | 3 | 3 | - | - | - | |
| ----------------------AGTCAGGCTGCTGGTTATAT--------------------------------------------------------- | 20 | 4 | 2 | - | - | - | |
| ------------------------------------------------------------------ATAACCAAAGCCCGACTGA-------------- | 19 | 1 | 4 | - | - | - | |
| ------------------------TCAGGCTGCTGGTTATAT--------------------------------------------------------- | 18 | 3 | 1 | - | - | - | |
| ------------------------TCAGGCTGCTGGTTATATTC------------------------------------------------------- | 20 | 2 | 2 | - | - | - | |
| ------------------------TCAGGCTGCTGGTTATATTCC------------------------------------------------------ | 21 | 2 | 2 | - | - | - | |
| ----------------------------------------------------------------GTATAACCAAAGCCCGACTGA-------------- | 21 | 2 | 1 | - | - | - | |
| ------------------------------------------------------------------ATAACCAAAGCCCGACTG--------------- | 18 | 2 | 1 | - | - | - | |
| ----------------------------------------------------------------GTATAACCAAAGCCCGAC----------------- | 18 | 2 | 1 | - | - | - | |
| -------------------------------------------------------------TGGGTATAACCAAAGCCCGAC----------------- | 21 | - | 1 | - | - | - | |
| -------------------------------------------------------TGGTCCTGGGTATAACCAA------------------------- | 19 | - | 1 | - | - | - | |
| --------------------------------------------------------GGTCCTGGGTATAACCAAAG----------------------- | 20 | - | 1 | - | - | - | |
| --------------------------AGGCTGCTGGTTATATTCC------------------------------------------------------ | 19 | 1 | - | - | - | - | |
| ----------------------AGTCAGGCTGCTGGTTATATT-------------------------------------------------------- | 21 | - | 1 | - | - | - | |
| rat | --------------ATCTGATCAGTCAGGCTGCTGGTTATATTCCAGGACTAATCTGGTCCTGGGTATAACCAAAGCCCGACTGAATGGT--------- | ||||||
| mouse | GTCTGCAGGGAAGGATTTGATCAGTCAGGCTTCTGGCTATATTCCAGGACATACCTGGTCCTGGGTATAACCAAAGCCCGACTGTATGGTACTAAAGAC | ||||||
| ** ************** **** ************* * ****************************** ***** | |||||||
| rat | ..(((.((((((.((((..((((((((.(((((((((.....))))))))))))))))).)))).)))))).))). | 1.000 -42.00 | |||||
| mouse | ((((..((......(((....(((((.(((((.(((.((((.((((((((.......)))))))))))).)))))))).)))))...))).))..)))) | 0.880 -37.00 | |||||
| rat | chromosome:1:115339512:115339587:-1 | intergenic |
| mouse | chromosome:7:68884222:68884320:-1 | intergenic |
©2008 InteRNA Genomics B.V.