sblock9475_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock9475_cand 5arm | 0 | 0 | 0 | 0 | 0.200 | 0 | 0.333 | 0 | 0 | 0 |
| sblock9475_cand 3arm | 0 | 0 | 2 | 0 | 9 | 0 | 0 | 2 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock9475_cand 5arm | 0 | 0 | 0 | 0 | 0.000 | 0 | 0.000 | 0 | 0 | 0 |
| sblock9475_cand 3arm | 0 | 0 | 0.000 | 0 | 0.000 | 0 | 0 | 0.000 | 0 | 0 |
sblock9475 (miRNA) [miRNAunknown_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.44/0.48 | 18/23/0.88 | 0.0 0.0 | 1.0 0.0 | 2 7 | 0 0 | 2 3 | 0 0 | 34 19 | -5 14 | 5arm_loop_3arm 3arm | 5 5 | nd nd | 0.30 0.23 | 4 2 | 16 | 4 | 15 | 0 |
| Member of family novel18 (seed GUGUGUG): sblock9475_cand, block78156_cand, block280302_cand, block1091454_cand, block2143793_cand |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------------UGACAGA--------------------------------- | 14 | novel | |||
| seed | -----------------------------------GUGUGUG--------------------------------------------------------------------- | 2 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S1 | T4S1 | T4S2 | |||
| ----------------------------------------------------------------------CTGACAGACATGTACACACACA------------------- | 22 | 1 | 7 | - | - | |
| ----------------------------------------------------------------------CTGACAGACATGTACACACAC-------------------- | 21 | - | 2 | - | 2 | |
| ----------------------------------------------------------------------CTGACAGACATGTACACA----------------------- | 18 | 2 | - | - | - | |
| ----------------------------------TGTGTGTGTGTGTCTGTCTTC-------------------------------------------------------- | 21 | - | 1 | - | - | |
| ----------------------------------TGTGTGTGTGTGTCTGTCTTCTG------------------------------------------------------ | 23 | - | - | 1 | - | |
| rat | gtcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtcttctggccaccatgcacaCTGACAGACATGTACACACACAtgcaggcacacgtaaggac | |||||
| *************************************************************************************************************** | ||||||
| .........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...................... | ENSRNOT00000063259 ENSRNOG00000041506 | |||||
| rat | (((((..((((((.((((((((((((((..(((.((((((((((((...(((....)))...)))))))))..))).)))..)))))))))))))).))))))...))))) | 1.000 -64.00 | ||||
| rat | chromosome:5:121903146:121903256:-1 | Opposite_strand|Exonic_non-coding|ENSRNOT00000063259|ENSRNOG00000041506 ## ENSRNOG00000041506|miRNA|| ## {Repeats: (CA)n 2 48 -1 class=Simple_repeat,dust 121903210 121903223 0 class=dust,trf 1 18 0 class=trf,(CA)n 2 19 -1 class=Simple_repeat} |
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