Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

sblock948_cand

sblock948_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
sblock948_cand 5arm	0	0	0	1	2	1	1	0	0	3
sblock948_cand 3arm	1	0	0	0	1	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
sblock948_cand 5arm	0	0	0	0.000	0.000	0.000	0.000	0	0	0.000
sblock948_cand 3arm	0.000	0	0	0	0.000	0	0	0	0	0

sblock948_cand relative cloning frequencies

sblock948 [novel_lenNOK_cloningOK_multiarm_DicerOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.43/0.61	18/23/0.50	0.0 0.0	1.5 1.0	8 2	0 0	5 2	0 0	28 27	0 2	5arm 3arm	1 1	nd nd	0.20 0.30	2 3	10	6	2	3

sblock948 hairpin

		reads	miRBase family seed
seed	-----------------------------GUGGCUA------------------------------------------------------------------------------	8	novel
seed	-----------------------------------------------------------------AUCUGCU------------------------------------------	2	novel
		len	cloning frequencies
			T1S1	T2S2	T3S1	T3S2	T4S1	T5S2
	----------------------------AGTGGCTATGAGGGCACC--------------------------------------------------------------------	18	-	-	-	-	1	2
	----------------------------AGTGGCTATGAGGGCACCT-------------------------------------------------------------------	19	-	-	-	1	-	1
	----------------------------AGTGGCTATGAGGGCACCTGGT----------------------------------------------------------------	22	-	1	1	-	-	-
	----------------------------------------------------------------CATCTGCTATCTTAGTCACCCTA---------------------------	23	-	-	1	-	-	-
	----------------------------------------------------------------CATCTGCTATCTTAGTCACCC-----------------------------	21	1	-	-	-	-	-
	----------------------------AGTGGCTATGAGGGCACCTG------------------------------------------------------------------	20	-	-	1	-	-	-
rat	tgctggatgccaccatctgcctcacctcAGTGGCTATGAGGGCACCTGGTtcagccccgtacacCATCTGCTATCTTAGTCACCCTAggttgggcaagaaggtctgctctacca
	******************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000045899 ENSRNOG00000020865 NP_001101034.1
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000028329 ENSRNOG00000020865 NP_001101034.1
rat	((.((((.((.(((.(((((((.((((..(((((((.((.((((..((((............))))..)))).)).)))))))...)))).))))).)).)))..)))))).))	1.000 -41.30

rat

chromosome:1:205044520:205044633:-1

Same_strand|Intronic_coding|ENSRNOT00000028329|ENSRNOG00000020865 ## ENSRNOG00000020865|protein_coding|NP_001101034.1|transmembrane protein 16A [Source:RefSeq_peptide;Acc:NP_001101034]

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