sblock9850_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock9850_cand 5arm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock9850_cand 3arm | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock9850_cand 5arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock9850_cand 3arm | 0 | 0 | 0 | 0.000 | 0 | 0.000 | 0 | 0 | 0 | 0 |
sblock9850 [novel_lenNOK_multiarm_DicerOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.50/0.58 | 19/21/0.67 | 0.0 1.0 | 0.0 0.5 | 1 2 | 0 0 | 1 2 | 0 0 | 8 5 | 6 8 | 5arm 3arm | 1 1 | 39 0 | 0.29 0.21 | 4 2 | 3 | 3 | 1 | 1 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------UUGCUGG---------------- | 1 | novel | ||
| seed | -------------------------------------------------AUUUGCU------------------ | 1 | novel | ||
| seed | ---------UGCCACG---------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T3S2 | |||
| --------TTGCCACGATCCAGTTTCTCC--------------------------------------------- | 21 | 1 | - | - | |
| --------------------------------------------------TTTGCTGGGTCTTGGCAGG----- | 19 | - | 1 | - | |
| ------------------------------------------------TATTTGCTGGGTCTTGGCAG------ | 20 | - | - | 1 | |
| rat | aagtttttTTGCCACGATCCAGTTTCTCCaggagcaaagtgctaaaggTATTTGCTGGGTCTTGGCAGGtagct | ||||
| ************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> | ENSRNOT00000012853 ENSRNOG00000009422 Hmgcl | ||||
| rat | .((((..(((((((.((((((((....((...(((.....)))...)).....)))))))).))))))).)))) | 0.990 -29.70 | |||
| rat | chromosome:5:154738387:154738460:1 | Same_strand|Intronic_coding|ENSRNOT00000012853|ENSRNOG00000009422 ## Same_strand|Boundary_coding|ENSRNOT00000012853|ENSRNOG00000009422 ## ENSRNOG00000009422|protein_coding|Hmgcl|Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor (EC 4.1.3.4) (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase). [Source:UniProtKB/Swiss-Prot;Acc:P97519] |
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