| Ensembl database: rattus_norvegicus_core_52_34u | UCSC database: rn4 | Mirbase version: 12.0 |
| Min read length: 18 | Max read length: 30 | Min mapped read length: 18 |
| READ trimming: THREE_PRIME_ALL_TRIM | Editing analysis: 0 | |
| Distance from stem base: 5 | Distance from loop: 0 | Max distance between mature and star: 50 |
| Min mature length: 20 | Max mature length: 24 | Relative read abundance for signature calculation:0.3 |
| Max mature GC: 0.9 | Min Dicer/Drosha overhang: 1 | Max Dicer/Drosha overhang: 3 |
| Min required reads for novel confident miRNA: 10 | Min required libs for novel confident miRNA: 2 | Lib/read overlap for confident novel miRNAs: AND |
| Randfold threshold for confident novel miRNAs: 0.01 | Species for conservation analysis: human mouse | RNA forester threshold for homology: 0.3 |
©2008 InteRNA Genomics B.V.